Miyakogusa Predicted Gene

Lj0g3v0304349.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304349.1 Non Characterized Hit- tr|E9C3V2|E9C3V2_CAPO3
Putative uncharacterized protein OS=Capsaspora
owczarz,43.04,0.0000001,SUBFAMILY NOT NAMED,NULL; VPRBP
PROTEIN-RELATED,NULL; seg,NULL,CUFF.20477.1
         (284 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein ...   401   e-112

>Medtr3g108470.1 | DDB1- and CUL4-associated factor-like protein | HC
            | chr3:50133071-50123613 | 20130731
          Length = 1929

 Score =  401 bits (1030), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 218/292 (74%), Positives = 232/292 (79%), Gaps = 19/292 (6%)

Query: 1    MLELCQAPPVD----DLHQYALGILHIVTLVPSSRKMIVNTTLSNNRAGIAVILDAANI- 55
            MLELCQAPPV+    DL QYALG+L IVTLVPSSRKMIVN TLS NRAGI+VILDAANI 
Sbjct: 849  MLELCQAPPVERYLHDLLQYALGVLQIVTLVPSSRKMIVNATLSTNRAGISVILDAANIA 908

Query: 56   RNRVDPEIIQLALNVLVYLVCPPPSISNRPSGVSQGQLFVSSQTSNGPPSETRDRNAERN 115
             + VDPEIIQ ALNVLV LVCPPPSISN+P  VSQGQ F SSQ SNG   ETRDRNAERN
Sbjct: 909  SSHVDPEIIQPALNVLVNLVCPPPSISNKPPAVSQGQQFPSSQASNGAL-ETRDRNAERN 967

Query: 116  TIDRVVHVTSQIDPRERNGDSSA---GSAVVLSAQSVNNTPQTPVPAASSGLVGDRRIXX 172
              D          PRERNG+SSA   G+A  L+ QSVN TPQTPVP+ASSGLVGDRRI  
Sbjct: 968  ITD----------PRERNGESSAVDRGTAAALTTQSVNTTPQTPVPSASSGLVGDRRISL 1017

Query: 173  XXXXXXXXXXXPLEQGYHQAREAVRSNEGIMVLLHLLQPHIDSSLASLDCLRALACRVLL 232
                        LEQGYHQAREAVR+N GI VLLHLLQP I S  A+LDCLRALACRVLL
Sbjct: 1018 GAGARCAGLATQLEQGYHQAREAVRNNNGIKVLLHLLQPRIYSPPAALDCLRALACRVLL 1077

Query: 233  GLARDDTIAHILTKLQVGKKLSELIQDSGSSTLGTEQGRWQAELSQAAIELI 284
            GLARDDTIAHILTKLQVGK+LSELI+DSGS+TLGTEQGRWQAELSQAAIELI
Sbjct: 1078 GLARDDTIAHILTKLQVGKRLSELIRDSGSTTLGTEQGRWQAELSQAAIELI 1129