Miyakogusa Predicted Gene

Lj0g3v0304209.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304209.1 Non Characterized Hit- tr|B8B9N6|B8B9N6_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,95.65,0.0001,Ribosomal_L1,Ribosomal protein L1; 60S RIBOSOMAL
PROTEIN L10A,NULL; RIBOSOMAL PROTEIN L7AE FAMILY ME,CUFF.20466.1
         (110 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g086500.2 | ribosomal protein L1p/L10e family protein | HC...   184   1e-47
Medtr2g086500.1 | ribosomal protein L1p/L10e family protein | HC...   184   1e-47
Medtr5g012930.1 | ribosomal protein L1p/L10e family protein | HC...   184   1e-47
Medtr3g070930.1 | ribosomal protein L1p/L10e family protein | HC...   183   4e-47
Medtr6g080610.1 | hypothetical protein | LC | chr6:28964365-2897...    51   2e-07

>Medtr2g086500.2 | ribosomal protein L1p/L10e family protein | HC |
           chr2:36366473-36369406 | 20130731
          Length = 216

 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/97 (93%), Positives = 94/97 (96%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLV+HQESLEAKVNETKAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GNVSM+EKQIFQNVQLSVNFLVSLLKKNWQNV  L +
Sbjct: 169 GNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYL 205


>Medtr2g086500.1 | ribosomal protein L1p/L10e family protein | HC |
           chr2:36366468-36369431 | 20130731
          Length = 216

 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/97 (93%), Positives = 94/97 (96%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLV+HQESLEAKVNETKAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GNVSM+EKQIFQNVQLSVNFLVSLLKKNWQNV  L +
Sbjct: 169 GNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYL 205


>Medtr5g012930.1 | ribosomal protein L1p/L10e family protein | HC |
           chr5:4015468-4012928 | 20130731
          Length = 216

 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/97 (93%), Positives = 94/97 (96%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLV+HQESLEAKVNETKAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEAKVNETKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GNVSM+EKQIFQNVQLSVNFLVSLLKKNWQNV  L +
Sbjct: 169 GNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYL 205


>Medtr3g070930.1 | ribosomal protein L1p/L10e family protein | HC |
           chr3:31828632-31832817 | 20130731
          Length = 216

 Score =  183 bits (464), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 90/97 (92%), Positives = 93/97 (95%)

Query: 3   FLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAV 62
           FLASEAVIKQIPRLLGPGLNKAGKFPTLV+HQESLE KVNETKAMVKFQLKKVLCMGVAV
Sbjct: 109 FLASEAVIKQIPRLLGPGLNKAGKFPTLVSHQESLEGKVNETKAMVKFQLKKVLCMGVAV 168

Query: 63  GNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVSTLLI 99
           GNVSM+EKQIFQNVQLSVNFLVSLLKKNWQNV  L +
Sbjct: 169 GNVSMDEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYL 205


>Medtr6g080610.1 | hypothetical protein | LC |
          chr6:28964365-28972013 | 20130731
          Length = 99

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 6  SEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLEAKVNETKAMVKFQLKKVLCMGVAVGNV 65
           E  ++++  LL P    A K       +E LE KVN+ +AMVKF LKKVLCMGVA GNV
Sbjct: 30 EEEQVRELYELLNPIGVHANK--DTAPSREYLETKVNQIEAMVKFHLKKVLCMGVANGNV 87