Miyakogusa Predicted Gene

Lj0g3v0304099.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0304099.1 Non Characterized Hit- tr|B9RSS0|B9RSS0_RICCO
Putative uncharacterized protein OS=Ricinus communis G,53.85,3e-19,
,CUFF.20453.1
         (93 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g094550.1 | mediator of RNA polymerase II transcription su...   127   3e-30
Medtr2g021400.1 | mediator of RNA polymerase II transcription su...    91   2e-19
Medtr7g056330.1 | mediator of RNA polymerase II transcription su...    79   1e-15
Medtr2g105810.1 | mediator of RNA polymerase II transcription su...    59   7e-10

>Medtr7g094550.1 | mediator of RNA polymerase II transcription
           subunit 33A | HC | chr7:37640277-37651980 | 20130731
          Length = 1338

 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 62/92 (67%), Positives = 71/92 (77%)

Query: 1   MLRSHIGSPNYEMTMKSIDDVLQLSHTFSQEVCGPGVVLVEFIFSIVWQLLEASLDDEGL 60
           ML+    SPNYEM M+SID+VLQLS  +S +VC PGV LVEF+FSI+WQLLEA LDDEGL
Sbjct: 125 MLQFRNNSPNYEMIMESIDNVLQLSQVYSHKVCEPGVALVEFVFSILWQLLEAILDDEGL 184

Query: 61  LGHGPENNPRWLSRSCDMNIDGPVCFSEKKTE 92
           L H PEN PRWLSRS DM+I    C +E KTE
Sbjct: 185 LDHVPENKPRWLSRSHDMDIAEHDCINEMKTE 216


>Medtr2g021400.1 | mediator of RNA polymerase II transcription
           subunit 33A | HC | chr2:7282174-7290385 | 20130731
          Length = 1319

 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 46/88 (52%), Positives = 57/88 (64%)

Query: 2   LRSHIGSPNYEMTMKSIDDVLQLSHTFSQEVCGPGVVLVEFIFSIVWQLLEASLDDEGLL 61
           L+S I  P+Y+  MKSID VL LS  F      PG+V+VEFIFSIVWQLL+ASLDDEGLL
Sbjct: 114 LKSQISRPDYQKDMKSIDAVLHLSKIFGMSQSEPGIVVVEFIFSIVWQLLDASLDDEGLL 173

Query: 62  GHGPENNPRWLSRSCDMNIDGPVCFSEK 89
               E   RW     +M +DG   ++E+
Sbjct: 174 EFTQEKKSRWAMLYQEMELDGRNNYTEQ 201


>Medtr7g056330.1 | mediator of RNA polymerase II transcription
           subunit 33A | HC | chr7:19823945-19827848 | 20130731
          Length = 372

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/70 (60%), Positives = 48/70 (68%), Gaps = 4/70 (5%)

Query: 23  QLSHTFSQEVCGPGVVLVEFIFSIVWQLLEASLDDEGLLGHGPENNPRWLSRSCDMNIDG 82
           QLS  +S  VC PGV LVEF+FSI+ QLLEA+LDDEGLL H      RWLS S DM+ID 
Sbjct: 71  QLSQEYSHNVCEPGVALVEFVFSILRQLLEATLDDEGLLDH----LARWLSISHDMDIDE 126

Query: 83  PVCFSEKKTE 92
            V  +E  TE
Sbjct: 127 HVRINEMTTE 136


>Medtr2g105810.1 | mediator of RNA polymerase II transcription
           subunit 33A | HC | chr2:45673309-45664907 | 20130731
          Length = 1316

 Score = 59.3 bits (142), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 34/70 (48%), Positives = 42/70 (60%), Gaps = 8/70 (11%)

Query: 2   LRSHIGSPNYEMTMKSIDDVLQLSHTFSQE--------VCGPGVVLVEFIFSIVWQLLEA 53
           L S I SPNY   M SI  +L+LS  +              PGVVLV+F+F++VWQLL+A
Sbjct: 113 LSSLINSPNYPSLMNSIHQLLRLSQLYHDSSSYPPPPPPPHPGVVLVQFLFTLVWQLLQA 172

Query: 54  SLDDEGLLGH 63
           SL DE LL H
Sbjct: 173 SLQDEALLQH 182