Miyakogusa Predicted Gene

Lj0g3v0303829.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0303829.1 Non Characterized Hit- tr|I3S103|I3S103_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,99.13,0,Ribosomal_L10,Ribosomal protein L10/acidic P0; MRNA
TURNOVER PROTEIN 4 MRT4,NULL; 60S ACIDIC RIBOSOM,CUFF.20434.1
         (229 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g007780.1 | ribosomal protein L10 family protein | HC | ch...   403   e-113
Medtr3g108280.1 | 60S acidic ribosomal protein P0-1 | HC | chr3:...    53   2e-07
Medtr5g082180.1 | 60S acidic ribosomal protein P0-1 | HC | chr5:...    51   1e-06

>Medtr2g007780.1 | ribosomal protein L10 family protein | HC |
           chr2:1121159-1118204 | 20130731
          Length = 228

 Score =  403 bits (1035), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/228 (85%), Positives = 214/228 (93%), Gaps = 1/228 (0%)

Query: 1   MPKSKRNKQVTLSKTKKKGREHKEVIVNAIRDAAEKYSSLYVFSFENMRNLKFKEFRDQL 60
           MPKSKRNKQVTLSKT KKGR HKE+I+N IRDAAEKYSS+YVF+F+NMRN K KEFR+QL
Sbjct: 1   MPKSKRNKQVTLSKTTKKGRGHKELIINGIRDAAEKYSSIYVFNFQNMRNSKLKEFREQL 60

Query: 61  KSSSRFFLGSNKVMQVALGRSASDEIKPRLYKVSKLLRGDSGMFFTNLSKEEVERLFNGY 120
           +SSS+FFLGSNKVMQVA+GRS+SDEIKP L+KVSKLLRGD+GM FTNLSKEEVERLFN +
Sbjct: 61  QSSSKFFLGSNKVMQVAIGRSSSDEIKPNLHKVSKLLRGDAGMIFTNLSKEEVERLFNEF 120

Query: 121 EEYDFARTGGIATEKVDLQEGPLEQFTHEMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 180
           E YDFARTG IATEKV+L+EGPLEQFTH+MEPFLRKQGMPVRLNKGVVELVSDFVVCEEG
Sbjct: 121 EGYDFARTGSIATEKVELKEGPLEQFTHDMEPFLRKQGMPVRLNKGVVELVSDFVVCEEG 180

Query: 181 KPLSPEASRILRLLGIKMATFRLHLVCRW-TPDDFELYIDGPGDSDVE 227
           KPLSPEASRILRL+G  MATFRL+LVCRW + DDFELYIDGPGDSDVE
Sbjct: 181 KPLSPEASRILRLMGNMMATFRLNLVCRWGSEDDFELYIDGPGDSDVE 228


>Medtr3g108280.1 | 60S acidic ribosomal protein P0-1 | HC |
           chr3:50021185-50023906 | 20130731
          Length = 323

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/175 (21%), Positives = 80/175 (45%), Gaps = 1/175 (0%)

Query: 35  EKYSSLYVFSFENMRNLKFKEFRDQLKSSSRFFLGSNKVMQVALGRSASDEIKPRLYKVS 94
           ++Y+ + V + +N+ + + +  R  L+  S   +G N +M+ ++   A          + 
Sbjct: 23  DEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAFLNLI 82

Query: 95  KLLRGDSGMFFTNLSKEEVERLFNGYEEYDFARTGGIATEKVDLQEGPLEQFTHEMEPFL 154
            LL G+ G+ FT    +EV      Y+    AR G +A   V +  G           F 
Sbjct: 83  PLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGN-TGLDPSQTSFF 141

Query: 155 RKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLLGIKMATFRLHLVCRW 209
           +   +P ++NKG VE+++   + ++G  +    + +L  LGI+  ++ L ++  +
Sbjct: 142 QVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVY 196


>Medtr5g082180.1 | 60S acidic ribosomal protein P0-1 | HC |
           chr5:35301210-35298120 | 20130731
          Length = 323

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/175 (20%), Positives = 80/175 (45%), Gaps = 1/175 (0%)

Query: 35  EKYSSLYVFSFENMRNLKFKEFRDQLKSSSRFFLGSNKVMQVALGRSASDEIKPRLYKVS 94
           ++++ + + + +N+ + + +  R  L+  S   +G N +M+ ++   A          + 
Sbjct: 23  DEFTQILIVNADNVGSKQLQNIRGGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAFLNLI 82

Query: 95  KLLRGDSGMFFTNLSKEEVERLFNGYEEYDFARTGGIATEKVDLQEGPLEQFTHEMEPFL 154
            LL G+ G+ FT    +EV      Y+    AR G +A   V +  G           F 
Sbjct: 83  PLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGN-TGLDPSQTSFF 141

Query: 155 RKQGMPVRLNKGVVELVSDFVVCEEGKPLSPEASRILRLLGIKMATFRLHLVCRW 209
           +   +P ++NKG VE+++   + ++G  +    + +L  LGI+  ++ L ++  +
Sbjct: 142 QVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYGLVVLSVY 196