Miyakogusa Predicted Gene

Lj0g3v0303699.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0303699.1 tr|B9I7G5|B9I7G5_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_894812 PE=4
SV=1,56.25,7e-19,PPR,Pentatricopeptide repeat; PPR: pentatricopeptide
repeat domain,Pentatricopeptide repeat; PENTATR,CUFF.20422.1
         (110 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g081220.1 | PPR containing plant-like protein | HC | chr4:...   103   2e-23
Medtr4g133410.14 | PPR containing protein, putative | HC | chr4:...    67   5e-12
Medtr4g133410.13 | PPR containing protein, putative | HC | chr4:...    67   5e-12
Medtr4g133410.16 | PPR containing protein, putative | HC | chr4:...    66   7e-12
Medtr4g133410.11 | PPR containing protein, putative | HC | chr4:...    66   7e-12
Medtr4g133410.5 | PPR containing protein, putative | HC | chr4:5...    66   8e-12
Medtr4g133410.12 | PPR containing protein, putative | HC | chr4:...    66   8e-12
Medtr4g133410.8 | PPR containing protein, putative | HC | chr4:5...    66   8e-12
Medtr4g133410.3 | PPR containing protein, putative | HC | chr4:5...    66   8e-12
Medtr4g133410.7 | PPR containing protein, putative | HC | chr4:5...    66   8e-12
Medtr4g133410.10 | PPR containing protein, putative | HC | chr4:...    66   8e-12
Medtr4g133410.9 | PPR containing protein, putative | HC | chr4:5...    66   8e-12
Medtr4g133410.1 | PPR containing protein, putative | HC | chr4:5...    65   1e-11
Medtr8g070020.1 | hypothetical protein | HC | chr8:29709016-2971...    65   1e-11
Medtr4g133410.15 | PPR containing protein, putative | HC | chr4:...    65   1e-11
Medtr4g133410.2 | PPR containing protein, putative | HC | chr4:5...    65   1e-11
Medtr4g133410.6 | PPR containing protein, putative | HC | chr4:5...    65   1e-11
Medtr4g133410.4 | PPR containing protein, putative | HC | chr4:5...    65   1e-11
Medtr5g034890.1 | hypothetical protein | LC | chr5:15168022-1517...    51   3e-07

>Medtr4g081220.1 | PPR containing plant-like protein | HC |
           chr4:31456316-31468677 | 20130731
          Length = 873

 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/99 (52%), Positives = 70/99 (70%), Gaps = 2/99 (2%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           MC+AG  LST VL SILQIC+E  +Y LVHR+ S I  HH+ L+ N +  R ++   +++
Sbjct: 416 MCQAGFELSTHVLQSILQICEEAYDYILVHRICSIIRCHHHYLQLNGDICRCLVHFCVRL 475

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNIS 97
           KDFE AY+M+++L  +   PTT MYNAIMA  FRE+NIS
Sbjct: 476 KDFERAYKMVNELHELGFKPTTAMYNAIMAGYFREKNIS 514


>Medtr4g133410.14 | PPR containing protein, putative | HC |
           chr4:55806827-55802637 | 20130731
          Length = 210

 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 2/101 (1%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 13  MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 72

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNISDG 99
           KDFE AY+M+++L+       T MYNAIMA  F E+N   G
Sbjct: 73  KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKNKIGG 113


>Medtr4g133410.13 | PPR containing protein, putative | HC |
           chr4:55806827-55802637 | 20130731
          Length = 205

 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 2/107 (1%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 13  MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 72

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGGGSLNK 105
           KDFE AY+M+++L+       T MYNAIMA  F E+N   G   L +
Sbjct: 73  KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKNKIGGLEVLKQ 119


>Medtr4g133410.16 | PPR containing protein, putative | HC |
           chr4:55806827-55805008 | 20130731
          Length = 247

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 60/101 (59%), Gaps = 2/101 (1%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 147 MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 206

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNISDG 99
           KDFE AY+M+++L+       T MYNAIMA  F E ++ DG
Sbjct: 207 KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEVSLLDG 247


>Medtr4g133410.11 | PPR containing protein, putative | HC |
           chr4:55806827-55802637 | 20130731
          Length = 272

 Score = 66.2 bits (160), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 2/101 (1%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 13  MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 72

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNISDG 99
           KDFE AY+M+++L+       T MYNAIMA  F E+N   G
Sbjct: 73  KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKNKIGG 113


>Medtr4g133410.5 | PPR containing protein, putative | HC |
           chr4:55806827-55802637 | 20130731
          Length = 344

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 2/101 (1%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 147 MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 206

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNISDG 99
           KDFE AY+M+++L+       T MYNAIMA  F E+N   G
Sbjct: 207 KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKNKIGG 247


>Medtr4g133410.12 | PPR containing protein, putative | HC |
           chr4:55806827-55802701 | 20130731
          Length = 344

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 2/101 (1%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 147 MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 206

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNISDG 99
           KDFE AY+M+++L+       T MYNAIMA  F E+N   G
Sbjct: 207 KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKNKIGG 247


>Medtr4g133410.8 | PPR containing protein, putative | HC |
           chr4:55806827-55802637 | 20130731
          Length = 386

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 13  MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 72

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERN 95
           KDFE AY+M+++L+       T MYNAIMA  F E+N
Sbjct: 73  KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKN 109


>Medtr4g133410.3 | PPR containing protein, putative | HC |
           chr4:55806827-55802637 | 20130731
          Length = 339

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 2/107 (1%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 147 MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 206

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGGGSLNK 105
           KDFE AY+M+++L+       T MYNAIMA  F E+N   G   L +
Sbjct: 207 KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKNKIGGLEVLKQ 253


>Medtr4g133410.7 | PPR containing protein, putative | HC |
           chr4:55806827-55802637 | 20130731
          Length = 339

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 2/107 (1%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 147 MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 206

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNISDGGGSLNK 105
           KDFE AY+M+++L+       T MYNAIMA  F E+N   G   L +
Sbjct: 207 KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKNKIGGLEVLKQ 253


>Medtr4g133410.10 | PPR containing protein, putative | HC |
           chr4:55806806-55802637 | 20130731
          Length = 350

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 2/101 (1%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 147 MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 206

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNISDG 99
           KDFE AY+M+++L+       T MYNAIMA  F E+N   G
Sbjct: 207 KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKNKIGG 247


>Medtr4g133410.9 | PPR containing protein, putative | HC |
           chr4:55806806-55802637 | 20130731
          Length = 350

 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 2/101 (1%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 147 MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 206

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERNISDG 99
           KDFE AY+M+++L+       T MYNAIMA  F E+N   G
Sbjct: 207 KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKNKIGG 247


>Medtr4g133410.1 | PPR containing protein, putative | HC |
           chr4:55806827-55802637 | 20130731
          Length = 520

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 147 MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 206

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERN 95
           KDFE AY+M+++L+       T MYNAIMA  F E+N
Sbjct: 207 KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKN 243


>Medtr8g070020.1 | hypothetical protein | HC |
           chr8:29709016-29712073 | 20130731
          Length = 412

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 133 MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 192

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERN 95
           KDFE AY+M+++L+       T MYNAIMA  F E+N
Sbjct: 193 KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKN 229


>Medtr4g133410.15 | PPR containing protein, putative | HC |
           chr4:55806827-55804370 | 20130731
          Length = 283

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 147 MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 206

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERN 95
           KDFE AY+M+++L+       T MYNAIMA  F E+N
Sbjct: 207 KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKN 243


>Medtr4g133410.2 | PPR containing protein, putative | HC |
           chr4:55806769-55803228 | 20130731
          Length = 406

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 147 MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 206

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERN 95
           KDFE AY+M+++L+       T MYNAIMA  F E+N
Sbjct: 207 KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKN 243


>Medtr4g133410.6 | PPR containing protein, putative | HC |
           chr4:55806827-55802637 | 20130731
          Length = 406

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 147 MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 206

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERN 95
           KDFE AY+M+++L+       T MYNAIMA  F E+N
Sbjct: 207 KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKN 243


>Medtr4g133410.4 | PPR containing protein, putative | HC |
           chr4:55806827-55802637 | 20130731
          Length = 406

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 58/97 (59%), Gaps = 2/97 (2%)

Query: 1   MCEAGLTLSTEVLHSILQICDEMSEYNLVHRVFSTI--HHYNLESNDETFRRMIDLFMKM 58
           M EAGLTLS+  + S+L+ C E  ++  V  ++S +  H ++ E N +    ++   + M
Sbjct: 147 MSEAGLTLSSHAMQSLLETCSETDQHFRVFEIYSIMSRHPHHFELNGKICWLLVHCCVVM 206

Query: 59  KDFEGAYRMLDDLKGMNMVPTTGMYNAIMAECFRERN 95
           KDFE AY+M+++L+       T MYNAIMA  F E+N
Sbjct: 207 KDFECAYKMVNELQKKYFKYKTTMYNAIMAGYFFEKN 243


>Medtr5g034890.1 | hypothetical protein | LC |
           chr5:15168022-15171475 | 20130731
          Length = 594

 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 2/69 (2%)

Query: 31  RVFSTIHHYNLESNDETFRRMIDLFMKMKDFEGAYRMLDDLKGMNMVPTTGMYNAIMAEC 90
           R  +  HH+ L  N E  R ++   + MKDFE AY+M+++L+       T MYNAIMA  
Sbjct: 228 RRVAIPHHFEL--NGEICRLLVHWCVVMKDFECAYKMVNELQKKYYKYKTTMYNAIMARY 285

Query: 91  FRERNISDG 99
           F E+NI  G
Sbjct: 286 FFEKNIIGG 294