Miyakogusa Predicted Gene

Lj0g3v0303459.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0303459.2 Non Characterized Hit- tr|J3N5D7|J3N5D7_ORYBR
Uncharacterized protein OS=Oryza brachyantha GN=OB11G1,70.42,6e-18,
,CUFF.20408.2
         (71 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g068580.1 | hypothetical protein | HC | chr1:29382847-2938...   120   4e-28
Medtr2g005070.1 | hypothetical protein | HC | chr2:27802-22687 |...   116   4e-27
Medtr2g048470.1 | hypothetical protein | HC | chr2:21353039-2134...    68   2e-12
Medtr2g048480.1 | transmembrane protein, putative | LC | chr2:21...    46   8e-06

>Medtr1g068580.1 | hypothetical protein | HC |
           chr1:29382847-29381031 | 20130731
          Length = 107

 Score =  120 bits (300), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 61/69 (88%)

Query: 2   KFLGWYLKIGIVSALLGASMELFMIKTGFYDKVTVLESEKRAWENSREAQAMRDALNPWR 61
           KFL WYLKIG+ SAL+GASME FM+KTGFYDKVTVLESEKRA ENS EAQA+R+ALNPWR
Sbjct: 38  KFLDWYLKIGVASALVGASMEFFMVKTGFYDKVTVLESEKRALENSPEAQAIREALNPWR 97

Query: 62  HIDAEGTKK 70
           H+D + T K
Sbjct: 98  HVDTKETNK 106


>Medtr2g005070.1 | hypothetical protein | HC | chr2:27802-22687 |
           20130731
          Length = 102

 Score =  116 bits (291), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 52/69 (75%), Positives = 59/69 (85%)

Query: 3   FLGWYLKIGIVSALLGASMELFMIKTGFYDKVTVLESEKRAWENSREAQAMRDALNPWRH 62
           FL WY KIG+ SAL+GASME FM+KTGFYDKVTVLESEKRA ENS EAQA+R+ALNPWRH
Sbjct: 34  FLDWYFKIGVASALVGASMEFFMVKTGFYDKVTVLESEKRALENSPEAQAIREALNPWRH 93

Query: 63  IDAEGTKKS 71
           +D + T K 
Sbjct: 94  VDTKETNKP 102


>Medtr2g048470.1 | hypothetical protein | HC |
           chr2:21353039-21345957 | 20130731
          Length = 121

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 35/41 (85%)

Query: 30  FYDKVTVLESEKRAWENSREAQAMRDALNPWRHIDAEGTKK 70
            YDKVTVLESEKRA ENS +AQA+R+ALNPWRH+D + T K
Sbjct: 80  LYDKVTVLESEKRALENSPDAQAIREALNPWRHVDTKETNK 120


>Medtr2g048480.1 | transmembrane protein, putative | LC |
          chr2:21356667-21359428 | 20130731
          Length = 59

 Score = 45.8 bits (107), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/28 (71%), Positives = 23/28 (82%)

Query: 3  FLGWYLKIGIVSALLGASMELFMIKTGF 30
          FL WYLKIG+ SA  GAS+E FM+KTGF
Sbjct: 13 FLDWYLKIGVASAFGGASIEFFMVKTGF 40