Miyakogusa Predicted Gene

Lj0g3v0303019.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0303019.1 Non Characterized Hit- tr|H2T5U0|H2T5U0_TAKRU
Uncharacterized protein (Fragment) OS=Takifugu
rubripe,28.09,1e-17,SUBFAMILY NOT NAMED,NULL; ZINC FINGER, CCHC DOMAIN
CONTAINING 8,NULL; proline-rich domain in spliceo,CUFF.20371.1
         (501 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g016990.1 | proline-rich spliceosome-associated family pro...   531   e-151

>Medtr6g016990.1 | proline-rich spliceosome-associated family
           protein, putative | HC | chr6:6652894-6661610 | 20130731
          Length = 543

 Score =  531 bits (1367), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 315/545 (57%), Positives = 377/545 (69%), Gaps = 56/545 (10%)

Query: 4   EHLNEVLPSVEVEHSG----------SEAANQHCGTEKEEYANSSQEKGLHVGSELSDTV 53
           EH+NE  P  E E++            E  N   G  +EE  +   +K L VG E+++TV
Sbjct: 5   EHINEA-PLSEAENNSVENLGGSDPLDEEKNLEDGKPEEEQCSEPVKKDLEVGLEVTETV 63

Query: 54  VVSEE-----VRPD-----------------IDGRGAKRARITVEE--HQPSVHFIYNSL 89
           +V EE     VR +                 I  RG KRARITV++  HQPSVHF Y SL
Sbjct: 64  LVLEEGVRETVRAENVSVTLKNEESSNGSITIGRRGVKRARITVDDDDHQPSVHFSYKSL 123

Query: 90  TRASRQKLEELLQQWSEWQAKHVPKSDDLSEVLESGEKTFFPALCVGLEKTSSVSFWMEN 149
           TRAS+ KL+ELLQQWS+W AK+V  S+D SEVLESGE+TFFPA+CVG E  SSVSFWMEN
Sbjct: 124 TRASKNKLQELLQQWSQWHAKNVSSSNDPSEVLESGEETFFPAICVGHESKSSVSFWMEN 183

Query: 150 QTSIDKNKDFI-LDGDSVPLYDRGYALGLTSADGSSNLDGGLEIIEDASRCFNCGSYNHS 208
           Q+  D+NKD   +DG+SVPLYDRGYALGLTSADGS+N D GL+II+  SRCFNCGSY+H+
Sbjct: 184 QSMNDRNKDVSPIDGNSVPLYDRGYALGLTSADGSNNADDGLKIIDAPSRCFNCGSYSHA 243

Query: 209 LRECSRPRDNVAVNSARKQRKSRRNQNVSSRNPTRYYQNSPAGKYDGLRPGALDNVTRRL 268
           LREC RPRDNVAVN+ARKQ KS+RNQ+ SSRNPTRYYQ+S AGKY GLRPGALD+ TR+L
Sbjct: 244 LRECPRPRDNVAVNNARKQLKSQRNQSSSSRNPTRYYQDSSAGKYAGLRPGALDDATRQL 303

Query: 269 LGLGELDPPPWLNRMREIGYPPGYLDVDAEDQPSGITIYTDAEIAEQEDGEIMEANHSKP 328
           LGLGELDPPPWLNRMRE+GYPPGYLD D EDQPSGITI+TD ++AEQEDGEI+ A+ SKP
Sbjct: 304 LGLGELDPPPWLNRMRELGYPPGYLDEDEEDQPSGITIFTDKDMAEQEDGEIIGADSSKP 363

Query: 329 KRKMTVGFPGINAPIPENADERLWAAGA--GPSSSDVSRNLPQHRSNHNTDHGSRGHYRE 386
           KRKM+V FPG+NAPIPENADERLWAA A   P + D+SRN  Q RS   +  GSRGH  +
Sbjct: 364 KRKMSVEFPGLNAPIPENADERLWAARAVVSPIAIDISRNWSQQRS---SSFGSRGHQHD 420

Query: 387 QXXXXXXXXXXXXXXXHSSLQYSFHPRFGGHESIPRSSSAGRSQDRNRSPLHDAESPRPF 446
           Q               H+S  +SF PRFG     P S +   S    RSP+H+  SP+PF
Sbjct: 421 QRIGDLRDDGPPGDPMHNSSHFSFQPRFGSGHVSPNSMADWSS---GRSPMHEEVSPKPF 477

Query: 447 SFHSLHYTSSGR-LSPMDRDSG-RLENWTPESLY--------DRDRNLPSRFVDR--PDD 494
           SFHSLHY++  R  SP+ RDSG R  N++   +Y        DRDR+L S+F DR   D 
Sbjct: 478 SFHSLHYSNPERHFSPLGRDSGSRYGNFSSGGMYDRDRDRDRDRDRDLSSQFNDRWSGDH 537

Query: 495 YHHRR 499
           +HH R
Sbjct: 538 HHHSR 542