Miyakogusa Predicted Gene

Lj0g3v0302969.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0302969.1 Non Characterized Hit- tr|K3Y7Y3|K3Y7Y3_SETIT
Uncharacterized protein OS=Setaria italica GN=Si010324,36.84,2e-19,no
description,Pseudouridine synthase I, TruA,
C-terminal,gene.g23583.t1.1
         (135 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g005830.1 | tRNA pseudouridine synthase A | HC | chr2:3378...   137   3e-33

>Medtr2g005830.1 | tRNA pseudouridine synthase A | HC |
           chr2:337857-333131 | 20130731
          Length = 361

 Score =  137 bits (344), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/177 (47%), Positives = 93/177 (52%), Gaps = 60/177 (33%)

Query: 16  YFYRLLSGPEPLSAFEKERAWHVPEDLNLSAM---------------------QAKSPIR 54
           YFYRLLSGPE LS FEK+RAWH+PE+LNL AM                     QAKSPIR
Sbjct: 164 YFYRLLSGPETLSTFEKDRAWHIPEELNLPAMQEACKVLVGHHDFSSFRASGCQAKSPIR 223

Query: 55  TLDELSVSEVIPSPNFPSLMDRERQNKVSGDPQGCHRKSEADIPL--------------- 99
           +LDELSV EV  SP FPS+MDRE    V+ D    H  SE  IPL               
Sbjct: 224 SLDELSVVEVTRSPYFPSVMDRENPINVTDDLHCFHSNSETVIPLGSSARIDEVSASKED 283

Query: 100 ------------------------TVRLLVGVLKAVGTGNLTIPDVERILNAKTVST 132
                                    VRLLVGVLK VGTGN+T+ DVERILNAKTV+ 
Sbjct: 284 VGFGKRRYHRCLVVTARARAFLYHQVRLLVGVLKDVGTGNITVTDVERILNAKTVTA 340