Miyakogusa Predicted Gene

Lj0g3v0302439.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0302439.1 Non Characterized Hit- tr|I1KYK4|I1KYK4_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,80.03,0,seg,NULL; CAF1,Ribonuclease CAF1; UNCHARACTERIZED,NULL;
POLY(A)-SPECIFIC RIBONUCLEASE/TARGET OF EGR1,CUFF.20326.1
         (713 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g460830.1 | poly(A)-specific ribonuclease PARN protein | H...   398   e-110

>Medtr3g460830.1 | poly(A)-specific ribonuclease PARN protein | HC |
           chr3:23946703-23945335 | 20130731
          Length = 245

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/237 (78%), Positives = 214/237 (90%)

Query: 438 RSSTWNPGGKHEAGYDAFMTGCVFTQLCSDLGVDFKLHESSKELALNEKLQKYVNHLYIS 497
           RSS+WNPGGKHEAGYDAFMTGC+F QLCSDLGVDFKLHESSK+LA NEKLQKY+NHLY+S
Sbjct: 5   RSSSWNPGGKHEAGYDAFMTGCIFAQLCSDLGVDFKLHESSKQLAFNEKLQKYINHLYLS 64

Query: 498 WMHGDIIDLSTGDKVADSSPSYSLKRRYPQILFENIVIMWGFPSKLKANEIRNCISLVFG 557
           ++HGDIIDL+TG  V +SSPSY+LKRRY QILFENIVI+WGFPS LKA+E+R C+S VFG
Sbjct: 65  YLHGDIIDLNTGYTVENSSPSYNLKRRYQQILFENIVIIWGFPSNLKASEVRECLSKVFG 124

Query: 558 SSSVVSIYHLDSTAVFVQFSKTNLVSDFLLLKDTLERSDGPILVLHPLAKLLEGGNTCAA 617
            +SVVS+YHLD+TAVFVQF+KT LVSDFLLLK++LERS+GPI VLHPL KLLEGGNTCAA
Sbjct: 125 LTSVVSVYHLDATAVFVQFNKTQLVSDFLLLKESLERSNGPISVLHPLGKLLEGGNTCAA 184

Query: 618 NYDAYREICGSTLSESLFADQAKAVGITWKTKLMECKVTLGSEEHENQSEQGNVNTA 674
           NYDAY+EICGS LSE+LFADQAKAVG+ WKTKL+E K +L S EHEN + + NVN A
Sbjct: 185 NYDAYKEICGSPLSETLFADQAKAVGMKWKTKLVEYKESLRSGEHENPTIEENVNDA 241