Miyakogusa Predicted Gene

Lj0g3v0301929.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0301929.1 Non Characterized Hit- tr|K0K9P2|K0K9P2_9PSEU
Putative deacetylase OS=Saccharothrix espanaensis DSM
,40.28,8e-18,Hist_deacetyl,Histone deacetylase domain; HISTONE
DEACETYLASE-RELATED,NULL; HISTONE DEACETYLASE,Hist,CUFF.20289.1
         (137 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g087270.1 | histone deacetylase superfamily protein | HC |...   218   1e-57
Medtr3g118535.1 | histone deacetylase family protein | HC | chr3...    48   4e-06
Medtr5g004640.2 | histone deacetylase family protein | HC | chr5...    47   5e-06
Medtr5g004640.1 | histone deacetylase family protein | HC | chr5...    47   5e-06

>Medtr2g087270.1 | histone deacetylase superfamily protein | HC |
           chr2:36680260-36677137 | 20130731
          Length = 386

 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 114/162 (70%), Positives = 120/162 (74%), Gaps = 36/162 (22%)

Query: 9   GTGFLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFYRSDKVITISLHMNHGSWGP 68
           G  FLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFY S+KV+T+SLHMNHGSWGP
Sbjct: 163 GYCFLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFYSSNKVLTVSLHMNHGSWGP 222

Query: 69  SHPQSGS-----------------------------------VPSIQKFGPDVIVLVIIG 93
           SHPQSGS                                   VPSI KF PD+IVLV +G
Sbjct: 223 SHPQSGSIDELGDGEGYGYNLNIPLPNGTGDNGYVYAFNELVVPSIHKFEPDMIVLV-VG 281

Query: 94  QDSSAFDPNGRQCLTMEGYREIGRIVHGLAAKHSDGRLLIVQ 135
           QDSSAFDPNGRQCLTMEGYREIGRIVHGLA +HSDGRLLIVQ
Sbjct: 282 QDSSAFDPNGRQCLTMEGYREIGRIVHGLAMRHSDGRLLIVQ 323


>Medtr3g118535.1 | histone deacetylase family protein | HC |
           chr3:55483175-55497394 | 20130731
          Length = 498

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 9   GTGFLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFYRSDKVITISLHMNHGSWGP 68
           G  ++N+  LA+ L L    ++V  +DID+H+G+G  E FY +D+V+T+S H     +G 
Sbjct: 158 GFCYVNDIVLAI-LELLKQHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFH----KFGD 212

Query: 69  SHPQSGSVPSI 79
             P +G +  I
Sbjct: 213 YFPGTGDLRDI 223


>Medtr5g004640.2 | histone deacetylase family protein | HC |
           chr5:52671-45920 | 20130731
          Length = 495

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 9   GTGFLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFYRSDKVITISLHMNHGSWGP 68
           G  ++N+  LA+ L L    ++V  +DID+H+G+G  E FY +D+V+T+S H     +G 
Sbjct: 161 GFCYVNDIVLAI-LELLKIHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFH----KFGD 215

Query: 69  SHPQSGSVPSI 79
             P +G V  I
Sbjct: 216 YFPGTGDVRDI 226


>Medtr5g004640.1 | histone deacetylase family protein | HC |
           chr5:52671-45920 | 20130731
          Length = 495

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 5/71 (7%)

Query: 9   GTGFLNNAGLAVQLALDSGCKKVAVIDIDVHYGNGTAEGFYRSDKVITISLHMNHGSWGP 68
           G  ++N+  LA+ L L    ++V  +DID+H+G+G  E FY +D+V+T+S H     +G 
Sbjct: 161 GFCYVNDIVLAI-LELLKIHERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFH----KFGD 215

Query: 69  SHPQSGSVPSI 79
             P +G V  I
Sbjct: 216 YFPGTGDVRDI 226