Miyakogusa Predicted Gene

Lj0g3v0300899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0300899.1 tr|I0Z284|I0Z284_9CHLO Photosystem I reaction
centre subunit VI OS=Coccomyxa subellipsoidea C-169 PE,45.95,1e-18,no
description,NULL; PSI_PsaH,Photosystem I PsaH, reaction centre subunit
VI; seg,NULL,CUFF.20342.1
         (144 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g101820.1 | photosystem I reaction center subunit VI | HC ...   187   3e-48
Medtr2g101820.2 | photosystem I reaction center subunit VI | HC ...   140   3e-34

>Medtr2g101820.1 | photosystem I reaction center subunit VI | HC |
           chr2:43807820-43809677 | 20130731
          Length = 147

 Score =  187 bits (475), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/128 (76%), Positives = 104/128 (81%), Gaps = 3/128 (2%)

Query: 1   MASLAT-LAAVQPAAIN--GLAGSSLNGTKLSFKSSRQSIKSKNFRNGAVVAKYGDKSVY 57
           MASLAT LA VQPA +N  GLAGSS+ GTKL+FK SRQ  KS N R+G+VVAKYGDKSVY
Sbjct: 1   MASLATSLACVQPAGLNVKGLAGSSITGTKLTFKPSRQIFKSNNLRSGSVVAKYGDKSVY 60

Query: 58  FDLEDIGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYY 117
           FDLEDIGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKR            STLAY+
Sbjct: 61  FDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYF 120

Query: 118 SATASGDI 125
           SATASGDI
Sbjct: 121 SATASGDI 128


>Medtr2g101820.2 | photosystem I reaction center subunit VI | HC |
          chr2:43807870-43808613 | 20130731
          Length = 108

 Score =  140 bits (354), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 77/93 (82%), Gaps = 3/93 (3%)

Query: 1  MASLAT-LAAVQPAAIN--GLAGSSLNGTKLSFKSSRQSIKSKNFRNGAVVAKYGDKSVY 57
          MASLAT LA VQPA +N  GLAGSS+ GTKL+FK SRQ  KS N R+G+VVAKYGDKSVY
Sbjct: 1  MASLATSLACVQPAGLNVKGLAGSSITGTKLTFKPSRQIFKSNNLRSGSVVAKYGDKSVY 60

Query: 58 FDLEDIGNTTGQWDLYGSDAPSPYNSLQSKFFE 90
          FDLEDIGNTTGQWDLYGSDAPSPYN LQ    +
Sbjct: 61 FDLEDIGNTTGQWDLYGSDAPSPYNPLQVCLLD 93