Miyakogusa Predicted Gene
- Lj0g3v0300719.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0300719.1 Non Characterized Hit- tr|I1LCM6|I1LCM6_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.55222
PE,85.36,0,seg,NULL; Ldh_1_N,Lactate/malate dehydrogenase, N-terminal;
NAD(P)-binding Rossmann-fold
domains,NUL,NODE_34460_length_747_cov_364.220886.path3.1
(239 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr1g090730.2 | NADP-dependent malate dehydrogenase | HC | chr... 385 e-107
Medtr1g090730.1 | NADP-dependent malate dehydrogenase | HC | chr... 383 e-107
Medtr8g005980.1 | cytoplasmic-like malate dehydrogenase | HC | c... 122 2e-28
Medtr1g043040.1 | cytoplasmic-like malate dehydrogenase | HC | c... 113 2e-25
Medtr1g076130.1 | cytoplasmic-like malate dehydrogenase | HC | c... 112 4e-25
>Medtr1g090730.2 | NADP-dependent malate dehydrogenase | HC |
chr1:40748575-40744691 | 20130731
Length = 408
Score = 385 bits (988), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/212 (89%), Positives = 195/212 (91%), Gaps = 2/212 (0%)
Query: 30 PRH--CAFALPQRTQHASISCSVAPNEVQVPAVQTLDSKGKPECYGVFCLTYDLKAEEET 87
PRH C A +RTQHA ISCSVAPN+VQVPAVQT D K KP+CYGVFCLTYDLKAEEET
Sbjct: 29 PRHHHCTLAPLRRTQHARISCSVAPNQVQVPAVQTQDPKNKPDCYGVFCLTYDLKAEEET 88
Query: 88 VSWKKLINIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSFQALEGVAMELE 147
SWKKLI IAVSGAAGMISNHLLFKLASGEVFGPNQP+ALKLLGSERS QALEGVAMELE
Sbjct: 89 KSWKKLITIAVSGAAGMISNHLLFKLASGEVFGPNQPVALKLLGSERSLQALEGVAMELE 148
Query: 148 DSLFPLLREVSIGIDSYEVFQDADWALLIGAKPRGPGMERADLLDINGKIFAEQGKALNA 207
DSLFPLLREV I ID YEVFQDADWALLIGAKPRGPG+ERA LLDING+IFAEQGKALNA
Sbjct: 149 DSLFPLLREVIISIDPYEVFQDADWALLIGAKPRGPGVERAALLDINGQIFAEQGKALNA 208
Query: 208 VASRNVKVIVVGNPCNTNALICLKNAPNIPAK 239
VASRNVKVIVVGNPCNTNALICLKNAPNIPAK
Sbjct: 209 VASRNVKVIVVGNPCNTNALICLKNAPNIPAK 240
>Medtr1g090730.1 | NADP-dependent malate dehydrogenase | HC |
chr1:40748776-40743707 | 20130731
Length = 437
Score = 383 bits (983), Expect = e-107, Method: Compositional matrix adjust.
Identities = 189/212 (89%), Positives = 195/212 (91%), Gaps = 2/212 (0%)
Query: 30 PRH--CAFALPQRTQHASISCSVAPNEVQVPAVQTLDSKGKPECYGVFCLTYDLKAEEET 87
PRH C A +RTQHA ISCSVAPN+VQVPAVQT D K KP+CYGVFCLTYDLKAEEET
Sbjct: 29 PRHHHCTLAPLRRTQHARISCSVAPNQVQVPAVQTQDPKNKPDCYGVFCLTYDLKAEEET 88
Query: 88 VSWKKLINIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSFQALEGVAMELE 147
SWKKLI IAVSGAAGMISNHLLFKLASGEVFGPNQP+ALKLLGSERS QALEGVAMELE
Sbjct: 89 KSWKKLITIAVSGAAGMISNHLLFKLASGEVFGPNQPVALKLLGSERSLQALEGVAMELE 148
Query: 148 DSLFPLLREVSIGIDSYEVFQDADWALLIGAKPRGPGMERADLLDINGKIFAEQGKALNA 207
DSLFPLLREV I ID YEVFQDADWALLIGAKPRGPG+ERA LLDING+IFAEQGKALNA
Sbjct: 149 DSLFPLLREVIISIDPYEVFQDADWALLIGAKPRGPGVERAALLDINGQIFAEQGKALNA 208
Query: 208 VASRNVKVIVVGNPCNTNALICLKNAPNIPAK 239
VASRNVKVIVVGNPCNTNALICLKNAPNIPAK
Sbjct: 209 VASRNVKVIVVGNPCNTNALICLKNAPNIPAK 240
>Medtr8g005980.1 | cytoplasmic-like malate dehydrogenase | HC |
chr8:430275-432634 | 20130731
Length = 413
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 70/159 (44%), Positives = 96/159 (60%), Gaps = 6/159 (3%)
Query: 81 LKAEEETVSWKKLINIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSFQALE 140
LK E+E V+ + V+GAAG I L+ +A G + GPNQP+ L +L E + +AL+
Sbjct: 81 LKVEKEPVT------VLVTGAAGQIGYALVPMIARGMMLGPNQPVILHMLDIEPALEALK 134
Query: 141 GVAMELEDSLFPLLREVSIGIDSYEVFQDADWALLIGAKPRGPGMERADLLDINGKIFAE 200
GV MEL D+ FPLLR V D E +D + A+++G PR GMER D++ N I+
Sbjct: 135 GVKMELIDAAFPLLRGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKT 194
Query: 201 QGKALNAVASRNVKVIVVGNPCNTNALICLKNAPNIPAK 239
Q AL A+ KV+V+ NP NTNALI + AP+IP K
Sbjct: 195 QASALEEHAAAYCKVLVIANPANTNALILKEFAPSIPEK 233
>Medtr1g043040.1 | cytoplasmic-like malate dehydrogenase | HC |
chr1:16122538-16117304 | 20130731
Length = 332
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 88/149 (59%)
Query: 91 KKLINIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSFQALEGVAMELEDSL 150
K + + V+GAAG I L+ +A G + GP+QP+ L +L + ++L GV MEL D+
Sbjct: 3 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIAPAAESLNGVKMELVDAA 62
Query: 151 FPLLREVSIGIDSYEVFQDADWALLIGAKPRGPGMERADLLDINGKIFAEQGKALNAVAS 210
FPLL+ V D E + A+++G PR GMER D++ N I+ Q AL A+
Sbjct: 63 FPLLKGVVATTDVVEACTGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKSQASALEKHAA 122
Query: 211 RNVKVIVVGNPCNTNALICLKNAPNIPAK 239
N KV+VV NP NTNALI + AP+IP +
Sbjct: 123 ANCKVLVVANPANTNALILKEFAPSIPER 151
>Medtr1g076130.1 | cytoplasmic-like malate dehydrogenase | HC |
chr1:33721743-33725370 | 20130731
Length = 332
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 88/149 (59%)
Query: 91 KKLINIAVSGAAGMISNHLLFKLASGEVFGPNQPIALKLLGSERSFQALEGVAMELEDSL 150
K + + V+GAAG I L+ +A G + GP+QP+ L +L + ++L GV MEL D+
Sbjct: 3 KDPVRVLVTGAAGQIGYALVPMIARGVMLGPDQPVILHMLDIPPAAESLNGVKMELVDAA 62
Query: 151 FPLLREVSIGIDSYEVFQDADWALLIGAKPRGPGMERADLLDINGKIFAEQGKALNAVAS 210
FPLL+ V D E + A+++G PR GMER D++ N I+ Q AL A+
Sbjct: 63 FPLLKGVVATTDVVEGCTGVNIAVMVGGFPRKEGMERKDVMTKNVSIYKSQASALEKHAA 122
Query: 211 RNVKVIVVGNPCNTNALICLKNAPNIPAK 239
N KV+VV NP NTNALI + AP+IP K
Sbjct: 123 ANCKVLVVANPANTNALILKEFAPSIPEK 151