Miyakogusa Predicted Gene

Lj0g3v0300669.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0300669.1 Non Characterized Hit- tr|I3SC00|I3SC00_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,97.93,0,RNase_PH,Exoribonuclease, phosphorolytic domain 1;
Ribosomal protein S5 domain 2-like,Ribosomal prot,CUFF.20212.1
         (194 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g058720.1 | exosome complex exonuclease RRP41 | HC | chr4:...   301   2e-82
Medtr7g116920.2 | exosome complex exonuclease RRP41 | HC | chr7:...    78   6e-15
Medtr7g116920.3 | exosome complex exonuclease RRP41 | HC | chr7:...    78   6e-15
Medtr7g116920.6 | exosome complex exonuclease RRP41 | HC | chr7:...    78   6e-15
Medtr7g116920.1 | exosome complex exonuclease RRP41 | HC | chr7:...    78   6e-15
Medtr7g116920.4 | exosome complex exonuclease RRP41 | HC | chr7:...    75   3e-14
Medtr7g116920.5 | exosome complex exonuclease RRP41 | HC | chr7:...    75   3e-14
Medtr7g076910.1 | exosome complex exonuclease RRP46 | HC | chr7:...    69   3e-12
Medtr7g076910.2 | exosome complex exonuclease RRP46 | HC | chr7:...    69   3e-12
Medtr3g072850.2 | exosome complex exonuclease RRP41 | HC | chr3:...    47   1e-05
Medtr3g072850.1 | exosome complex exonuclease RRP41 | HC | chr3:...    47   1e-05

>Medtr4g058720.1 | exosome complex exonuclease RRP41 | HC |
           chr4:21605546-21609796 | 20130731
          Length = 258

 Score =  301 bits (772), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 150/195 (76%), Positives = 158/195 (81%), Gaps = 1/195 (0%)

Query: 1   MAGKAGXXXXXXXXXXXXDKKKTSLIKE-DWVRPDGRGFHQCRPAFFRTXXXXXXXXXXX 59
           MAGK+G             KKK  L+KE DW RPDGRGFHQCRPAFFRT           
Sbjct: 1   MAGKSGTTPATYSPSLTTGKKKPLLLKEEDWTRPDGRGFHQCRPAFFRTGAVNAASGSAY 60

Query: 60  XEFGNTKVIVSVFGPRESKKAMLYSDVGRLNCNVSYTTFATPVRGQGSDHKDYSAMLDKA 119
            EFGNTKVIVSVFGPRESKKAM+YSD GRLNCNVSYTTF+TPVRGQGSDHK+YS+ML KA
Sbjct: 61  AEFGNTKVIVSVFGPRESKKAMMYSDTGRLNCNVSYTTFSTPVRGQGSDHKEYSSMLHKA 120

Query: 120 LGGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLS 179
           L GAIIL+SFPKTTVDVFALVLES GSDLPVVIS ASLALADAGI+MYDLVASVSVSCL 
Sbjct: 121 LEGAIILDSFPKTTVDVFALVLESSGSDLPVVISVASLALADAGILMYDLVASVSVSCLG 180

Query: 180 KNLVIDPISEEENCQ 194
           KNLVIDPI EEEN Q
Sbjct: 181 KNLVIDPIFEEENSQ 195


>Medtr7g116920.2 | exosome complex exonuclease RRP41 | HC |
           chr7:48284765-48280111 | 20130731
          Length = 241

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 5/165 (3%)

Query: 26  IKEDWVRPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRE-SKKAMLYS 84
           +  + +R DGR   + R                  E GNTKVI +V+GPRE   ++   S
Sbjct: 4   VSPEGLRSDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQMS 63

Query: 85  DVGRLNCNVSYTTFAT--PVRGQGSDHK--DYSAMLDKALGGAIILESFPKTTVDVFALV 140
           D   + C  S   F+T   +R    D +  + S ++ + +   I+    P++ +D++  V
Sbjct: 64  DKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQV 123

Query: 141 LESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLSKNLVID 185
           L++ G      I+ A+LALADAGI M DLV S S   L+   ++D
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLD 168


>Medtr7g116920.3 | exosome complex exonuclease RRP41 | HC |
           chr7:48284765-48280111 | 20130731
          Length = 241

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 5/165 (3%)

Query: 26  IKEDWVRPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRE-SKKAMLYS 84
           +  + +R DGR   + R                  E GNTKVI +V+GPRE   ++   S
Sbjct: 4   VSPEGLRSDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQMS 63

Query: 85  DVGRLNCNVSYTTFAT--PVRGQGSDHK--DYSAMLDKALGGAIILESFPKTTVDVFALV 140
           D   + C  S   F+T   +R    D +  + S ++ + +   I+    P++ +D++  V
Sbjct: 64  DKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQV 123

Query: 141 LESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLSKNLVID 185
           L++ G      I+ A+LALADAGI M DLV S S   L+   ++D
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLD 168


>Medtr7g116920.6 | exosome complex exonuclease RRP41 | HC |
           chr7:48284765-48280111 | 20130731
          Length = 241

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 5/165 (3%)

Query: 26  IKEDWVRPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRE-SKKAMLYS 84
           +  + +R DGR   + R                  E GNTKVI +V+GPRE   ++   S
Sbjct: 4   VSPEGLRSDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQMS 63

Query: 85  DVGRLNCNVSYTTFAT--PVRGQGSDHK--DYSAMLDKALGGAIILESFPKTTVDVFALV 140
           D   + C  S   F+T   +R    D +  + S ++ + +   I+    P++ +D++  V
Sbjct: 64  DKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQV 123

Query: 141 LESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLSKNLVID 185
           L++ G      I+ A+LALADAGI M DLV S S   L+   ++D
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLD 168


>Medtr7g116920.1 | exosome complex exonuclease RRP41 | HC |
           chr7:48284765-48280111 | 20130731
          Length = 241

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 80/165 (48%), Gaps = 5/165 (3%)

Query: 26  IKEDWVRPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRE-SKKAMLYS 84
           +  + +R DGR   + R                  E GNTKVI +V+GPRE   ++   S
Sbjct: 4   VSPEGLRSDGRRPMEMRQIRAEIGAVSKADGSAIFEMGNTKVIAAVYGPREVQNRSQQMS 63

Query: 85  DVGRLNCNVSYTTFAT--PVRGQGSDHK--DYSAMLDKALGGAIILESFPKTTVDVFALV 140
           D   + C  S   F+T   +R    D +  + S ++ + +   I+    P++ +D++  V
Sbjct: 64  DKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLVIRQTMEECILTHLMPRSQIDIYVQV 123

Query: 141 LESGGSDLPVVISCASLALADAGIMMYDLVASVSVSCLSKNLVID 185
           L++ G      I+ A+LALADAGI M DLV S S   L+   ++D
Sbjct: 124 LQADGGTRSACINAATLALADAGIPMLDLVTSCSAGYLNSTPLLD 168


>Medtr7g116920.4 | exosome complex exonuclease RRP41 | HC |
           chr7:48284765-48280111 | 20130731
          Length = 223

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 5/130 (3%)

Query: 61  EFGNTKVIVSVFGPRE-SKKAMLYSDVGRLNCNVSYTTFAT--PVRGQGSDHK--DYSAM 115
           E GNTKVI +V+GPRE   ++   SD   + C  S   F+T   +R    D +  + S +
Sbjct: 21  EMGNTKVIAAVYGPREVQNRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLV 80

Query: 116 LDKALGGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSV 175
           + + +   I+    P++ +D++  VL++ G      I+ A+LALADAGI M DLV S S 
Sbjct: 81  IRQTMEECILTHLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMLDLVTSCSA 140

Query: 176 SCLSKNLVID 185
             L+   ++D
Sbjct: 141 GYLNSTPLLD 150


>Medtr7g116920.5 | exosome complex exonuclease RRP41 | HC |
           chr7:48284765-48280111 | 20130731
          Length = 223

 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/130 (34%), Positives = 71/130 (54%), Gaps = 5/130 (3%)

Query: 61  EFGNTKVIVSVFGPRE-SKKAMLYSDVGRLNCNVSYTTFAT--PVRGQGSDHK--DYSAM 115
           E GNTKVI +V+GPRE   ++   SD   + C  S   F+T   +R    D +  + S +
Sbjct: 21  EMGNTKVIAAVYGPREVQNRSQQMSDKALVRCEYSMANFSTGDRMRKPKGDRRSTEISLV 80

Query: 116 LDKALGGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVASVSV 175
           + + +   I+    P++ +D++  VL++ G      I+ A+LALADAGI M DLV S S 
Sbjct: 81  IRQTMEECILTHLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPMLDLVTSCSA 140

Query: 176 SCLSKNLVID 185
             L+   ++D
Sbjct: 141 GYLNSTPLLD 150


>Medtr7g076910.1 | exosome complex exonuclease RRP46 | HC |
           chr7:29054956-29057134 | 20130731
          Length = 243

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 8/162 (4%)

Query: 32  RPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRESKKAMLYSDVGRLNC 91
           RPDGR  +Q RP                   G TKV+ +V+GP+   K     +      
Sbjct: 5   RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPE------ 58

Query: 92  NVSYTTFATPVRGQ-GSDHKDYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPV 150
             S      P  G  G   ++Y  +L K L    I   +P TT  V   V+   G+ LP 
Sbjct: 59  KASIEVIWKPNTGHVGQADREYEMILKKTLESICIRTIYPNTTTSVIVQVVHDDGALLPC 118

Query: 151 VISCASLALADAGIMMYDLVASVSVSCLSKN-LVIDPISEEE 191
            I+ A  AL DAGI +  L  ++  S    N +++DP  +EE
Sbjct: 119 AINAACAALVDAGIPLRHLAVAICCSVTDNNSIILDPSKKEE 160


>Medtr7g076910.2 | exosome complex exonuclease RRP46 | HC |
           chr7:29054956-29057134 | 20130731
          Length = 243

 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 68/162 (41%), Gaps = 8/162 (4%)

Query: 32  RPDGRGFHQCRPAFFRTXXXXXXXXXXXXEFGNTKVIVSVFGPRESKKAMLYSDVGRLNC 91
           RPDGR  +Q RP                   G TKV+ +V+GP+   K     +      
Sbjct: 5   RPDGRSPNQLRPLACSHSVLHRAHGSATWAQGETKVLAAVYGPKAGTKKNENPE------ 58

Query: 92  NVSYTTFATPVRGQ-GSDHKDYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPV 150
             S      P  G  G   ++Y  +L K L    I   +P TT  V   V+   G+ LP 
Sbjct: 59  KASIEVIWKPNTGHVGQADREYEMILKKTLESICIRTIYPNTTTSVIVQVVHDDGALLPC 118

Query: 151 VISCASLALADAGIMMYDLVASVSVSCLSKN-LVIDPISEEE 191
            I+ A  AL DAGI +  L  ++  S    N +++DP  +EE
Sbjct: 119 AINAACAALVDAGIPLRHLAVAICCSVTDNNSIILDPSKKEE 160


>Medtr3g072850.2 | exosome complex exonuclease RRP41 | HC |
           chr3:32790648-32787032 | 20130731
          Length = 165

 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%)

Query: 111 DYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLV 170
           + S ++ + +   I+    P++ +D++  VL++ G      I+ A+LALADAGI + DLV
Sbjct: 48  EISLVIRQTMEERILTHLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPVRDLV 107

Query: 171 ASVSVSCLSKNLVID 185
            S S   L+   ++D
Sbjct: 108 TSCSAGYLNSTALLD 122


>Medtr3g072850.1 | exosome complex exonuclease RRP41 | HC |
           chr3:32790648-32787032 | 20130731
          Length = 165

 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 43/75 (57%)

Query: 111 DYSAMLDKALGGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLV 170
           + S ++ + +   I+    P++ +D++  VL++ G      I+ A+LALADAGI + DLV
Sbjct: 48  EISLVIRQTMEERILTHLMPRSQIDIYVQVLQADGGTRSACINAATLALADAGIPVRDLV 107

Query: 171 ASVSVSCLSKNLVID 185
            S S   L+   ++D
Sbjct: 108 TSCSAGYLNSTALLD 122