Miyakogusa Predicted Gene

Lj0g3v0300389.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0300389.1 Non Characterized Hit- tr|I1JEW7|I1JEW7_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,67.69,6e-18,seg,NULL,CUFF.20182.1
         (87 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g086740.1 | plastocyanin-like domain protein | HC | chr4:3...   124   3e-29
Medtr4g086750.1 | plastocyanin-like domain protein | HC | chr4:3...   123   3e-29
Medtr4g086710.1 | plastocyanin-like domain protein | HC | chr4:3...   120   4e-28
Medtr4g086730.1 | plastocyanin-like domain protein | HC | chr4:3...   119   9e-28
Medtr3g101260.1 | plastocyanin-like domain protein | HC | chr3:4...    47   6e-06

>Medtr4g086740.1 | plastocyanin-like domain protein | HC |
          chr4:34003801-34003089 | 20130731
          Length = 182

 Score =  124 bits (310), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 63/88 (71%), Gaps = 2/88 (2%)

Query: 2  AVKFTQALIMLVITVSMFAVSMANKDWSS--GFNYTDWWSRFGNHHHNKTXXXXXPKQIL 59
             F      LVIT SMF V+MANKDW S   FNYTDWWSRFGNHHH        PK I+
Sbjct: 4  TTNFVHVFTFLVITTSMFTVTMANKDWPSFGNFNYTDWWSRFGNHHHQINKTEQQPKNII 63

Query: 60 VGGSEHWHFGYNYSDWAIKSAPFYLNDT 87
          VGGS++WHFGYNYSDWAIK+ PFYLNDT
Sbjct: 64 VGGSQNWHFGYNYSDWAIKNGPFYLNDT 91


>Medtr4g086750.1 | plastocyanin-like domain protein | HC |
          chr4:34008307-34007418 | 20130731
          Length = 184

 Score =  123 bits (309), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 56/82 (68%), Positives = 65/82 (79%), Gaps = 2/82 (2%)

Query: 8  ALIMLVITVSMFAVSMANKDWSS--GFNYTDWWSRFGNHHHNKTXXXXXPKQILVGGSEH 65
           L++++IT SMF V+MANKDW S   FNYTDWWSRFGNHHH        PK I+VGGS++
Sbjct: 12 TLLLVIITTSMFTVTMANKDWPSFGNFNYTDWWSRFGNHHHQINKTEQQPKNIIVGGSQN 71

Query: 66 WHFGYNYSDWAIKSAPFYLNDT 87
          WHFGYNYSDWAIK+ PFYLNDT
Sbjct: 72 WHFGYNYSDWAIKNGPFYLNDT 93


>Medtr4g086710.1 | plastocyanin-like domain protein | HC |
          chr4:33995689-33994961 | 20130731
          Length = 183

 Score =  120 bits (300), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 53/82 (64%), Positives = 66/82 (80%), Gaps = 2/82 (2%)

Query: 8  ALIMLVITVSMFAVSMANKDWSS--GFNYTDWWSRFGNHHHNKTXXXXXPKQILVGGSEH 65
           L++++I+ SMF V++ANKDW S   FNYTDWWSRFGNHHH        PK+I+VGGS++
Sbjct: 12 TLLLVIISASMFTVTVANKDWPSFGNFNYTDWWSRFGNHHHQINKTEQQPKKIIVGGSQN 71

Query: 66 WHFGYNYSDWAIKSAPFYLNDT 87
          WHFGYNYSDWAIK+ PFY+NDT
Sbjct: 72 WHFGYNYSDWAIKNGPFYVNDT 93


>Medtr4g086730.1 | plastocyanin-like domain protein | HC |
          chr4:34000379-33999721 | 20130731
          Length = 183

 Score =  119 bits (297), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 53/80 (66%), Positives = 64/80 (80%), Gaps = 2/80 (2%)

Query: 10 IMLVITVSMFAVSMANKDWSS--GFNYTDWWSRFGNHHHNKTXXXXXPKQILVGGSEHWH 67
          ++++IT SMF V++ANKDW S   FNYTDWWSRFGNHH         PK+I+VGGS++WH
Sbjct: 13 LLVIITASMFTVTVANKDWPSFGNFNYTDWWSRFGNHHRQINKTEQQPKKIIVGGSQNWH 72

Query: 68 FGYNYSDWAIKSAPFYLNDT 87
          FGYNYSDWAIK+ PFYLNDT
Sbjct: 73 FGYNYSDWAIKNGPFYLNDT 92


>Medtr3g101260.1 | plastocyanin-like domain protein | HC |
          chr3:46587432-46588034 | 20130731
          Length = 130

 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 19/32 (59%), Positives = 24/32 (75%)

Query: 56 KQILVGGSEHWHFGYNYSDWAIKSAPFYLNDT 87
          + ILVG SE W  G NY+ WAIK++PF +NDT
Sbjct: 13 RSILVGDSEGWRAGTNYTQWAIKNSPFQINDT 44