Miyakogusa Predicted Gene

Lj0g3v0299789.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0299789.1 Non Characterized Hit- tr|A5AEG8|A5AEG8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,39.16,3e-17,PRICHEXTENSN,NULL; seg,NULL,CUFF.20140.1
         (257 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g008675.1 | transmembrane protein, putative | LC | chr1:10...    72   4e-13
Medtr1g008620.1 | transmembrane protein, putative | HC | chr1:99...    69   4e-12
Medtr1g029140.1 | transmembrane protein, putative | HC | chr1:99...    54   1e-07

>Medtr1g008675.1 | transmembrane protein, putative | LC |
           chr1:1022692-1021643 | 20130731
          Length = 186

 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 50/61 (81%), Gaps = 6/61 (9%)

Query: 155 VIHFDEHKTVKETILPGPFGQKTVVITVEDDVHVDEEIRKNEEVVGHGHGLH--DAKTSS 212
           +IH DEHK  KETI+PGPFGQ+ VVI+VEDDVHVDE  +K++++   GHGLH  DAK+SS
Sbjct: 50  IIHIDEHKKGKETIVPGPFGQQAVVISVEDDVHVDES-KKSKKL---GHGLHANDAKSSS 105

Query: 213 S 213
           +
Sbjct: 106 A 106



 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/59 (62%), Positives = 46/59 (77%), Gaps = 5/59 (8%)

Query: 155 VIHFDEHKTVKETILPGPFGQKTVVITVEDDVHVDEEIRKNEEVVGHGHGLHDAKTSSS 213
           +IH DEHK   ETI PGPFGQ+ V I+VEDDVHVDE  +K+E++   GHGLH AK+SS+
Sbjct: 107 IIHIDEHKKGMETIAPGPFGQQAVAISVEDDVHVDES-KKSEKL---GHGLH-AKSSSA 160


>Medtr1g008620.1 | transmembrane protein, putative | HC |
           chr1:998514-997642 | 20130731
          Length = 178

 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 4/64 (6%)

Query: 155 VIHFDEHKTVKETILPGPFGQKTVVITVEDDVHVDEEIRKNEEVVGHGHGLHDAKTSSSS 214
           +IH DEHK  KETI+PGPFGQ+ VVI+VEDDVHVD E RK E+     HGLH   +S++ 
Sbjct: 45  IIHIDEHKKGKETIVPGPFGQQAVVISVEDDVHVD-ETRKKEKF---DHGLHAQSSSATI 100

Query: 215 PITE 218
            I E
Sbjct: 101 HIDE 104



 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 46/58 (79%), Gaps = 5/58 (8%)

Query: 156 IHFDEHKTVKETILPGPFGQKTVVITVEDDVHVDEEIRKNEEVVGHGHGLHDAKTSSS 213
           IH DEHK  KETI PGPFGQ+ V I+VEDDVHVDE  +K+E++   GHGL+ AK+SS+
Sbjct: 100 IHIDEHKKGKETIAPGPFGQQAVAISVEDDVHVDES-KKSEKL---GHGLY-AKSSSA 152


>Medtr1g029140.1 | transmembrane protein, putative | HC |
           chr1:9945563-9946595 | 20130731
          Length = 250

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 45/61 (73%), Gaps = 4/61 (6%)

Query: 155 VIHFDEHKTVKETILPGPFGQKTVVITVEDDVHVDEEIRKNEEVVGHGHGLHDAKTSSSS 214
           VIH DEHK + E I+PGPFGQ TVV+TVEDDVH+DE I+KN EV   GH LH A+ S   
Sbjct: 160 VIHIDEHKKITENIVPGPFGQPTVVVTVEDDVHIDEVIKKNAEV---GHALH-AEASKVE 215

Query: 215 P 215
           P
Sbjct: 216 P 216