Miyakogusa Predicted Gene

Lj0g3v0299499.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0299499.1 Non Characterized Hit- tr|I1N1F6|I1N1F6_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,60.56,2e-17,
,CUFF.20115.1
         (137 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g060280.1 | transmembrane protein | LC | chr1:26234650-262...   119   7e-28
Medtr8g090020.1 | transmembrane protein | HC | chr8:37672328-376...    99   8e-22
Medtr8g063930.1 | transmembrane protein | HC | chr8:26812665-268...    86   1e-17

>Medtr1g060280.1 | transmembrane protein | LC |
           chr1:26234650-26235657 | 20130731
          Length = 335

 Score =  119 bits (299), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 67/83 (80%)

Query: 52  YAGFWGLHFFAMICCVAIGKLLMMYLEWSAIWNMSIVISVLDGVYGIGAFRVSYFFSRGN 111
           Y+ F    FFA I CVAIGKLLM+YLEWSAIWNMSI  SVLDG+YGI A RVSYF+S GN
Sbjct: 188 YSAFGCYIFFATISCVAIGKLLMVYLEWSAIWNMSIATSVLDGIYGIRALRVSYFYSSGN 247

Query: 112 QKTGLLLMLVFFIFGFCLRLISL 134
           QK GL+LMLVFF++G  LRLI +
Sbjct: 248 QKRGLVLMLVFFVYGVFLRLICI 270


>Medtr8g090020.1 | transmembrane protein | HC |
           chr8:37672328-37673497 | 20130731
          Length = 295

 Score = 99.4 bits (246), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 60/82 (73%)

Query: 56  WGLHFFAMICCVAIGKLLMMYLEWSAIWNMSIVISVLDGVYGIGAFRVSYFFSRGNQKTG 115
           W    F  IC +A+GKLLM+YLE SAIWNMSIV+SVL+G+YG GA + SY+FS GN K G
Sbjct: 188 WCYIIFGSICFIAVGKLLMIYLECSAIWNMSIVVSVLEGIYGTGALKGSYYFSSGNHKRG 247

Query: 116 LLLMLVFFIFGFCLRLISLSKE 137
           L++MLVFF+FG  L      K+
Sbjct: 248 LVMMLVFFVFGGVLSCCQREKK 269


>Medtr8g063930.1 | transmembrane protein | HC |
           chr8:26812665-26816284 | 20130731
          Length = 394

 Score = 85.9 bits (211), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/70 (60%), Positives = 53/70 (75%)

Query: 61  FAMICCVAIGKLLMMYLEWSAIWNMSIVISVLDGVYGIGAFRVSYFFSRGNQKTGLLLML 120
           FA+IC +   KLL MYLEWS+IWN S+VIS+L+G+YGI A  +S  FSRG Q+ GL LML
Sbjct: 185 FALICSMLFAKLLKMYLEWSSIWNTSLVISILEGIYGIDALVLSLNFSRGCQRKGLFLML 244

Query: 121 VFFIFGFCLR 130
           +FF +G  LR
Sbjct: 245 IFFAWGQFLR 254