Miyakogusa Predicted Gene

Lj0g3v0297619.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0297619.1 tr|Q6V0J6|Q6V0J6_BRACM Reduced vernalization
response 1 OS=Brassica campestris PE=2
SV=1,59.34,4e-18,seg,NULL,gene.g23149.t1.1
         (274 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g034240.1 | B3 domain transcription factor VRN1-like prote...   320   1e-87
Medtr4g068320.1 | B3 domain transcription factor VRN1-like prote...   264   6e-71
Medtr1g034210.2 | B3 domain transcription factor VRN1-like prote...    81   1e-15
Medtr1g034210.3 | B3 domain transcription factor VRN1-like prote...    81   1e-15
Medtr1g034210.1 | B3 domain transcription factor VRN1-like prote...    81   1e-15

>Medtr1g034240.1 | B3 domain transcription factor VRN1-like protein
           | HC | chr1:12442470-12446398 | 20130731
          Length = 433

 Score =  320 bits (820), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 163/235 (69%), Positives = 183/235 (77%), Gaps = 6/235 (2%)

Query: 2   YEGNSSFIVHIFNMSTSEVNYQSAVRSRNEGPVFTNYHHIFVEMEDTDSFEFMDSSPSNL 61
           YEGNS+FIVHIFNMST+E+NYQSA+RSR EGP + NYH IF ++ED DSFEF+DSSPSNL
Sbjct: 85  YEGNSNFIVHIFNMSTAELNYQSAMRSRTEGPCYANYHPIFEDIEDIDSFEFLDSSPSNL 144

Query: 62  TPGSLQNKVFGGSVDQLTPGKNQSPARQNLFNGGSKLNRVNWGDSGSPFPSKDANSQGNH 121
           TPG+LQ+KVF GS+DQLTP KN +P+ QNLFNGGSKLN VNWGD G    SK A      
Sbjct: 145 TPGALQDKVFSGSLDQLTPAKNHTPSLQNLFNGGSKLNHVNWGDIGGTLSSKSA----IQ 200

Query: 122 STRDIGVQFNAVEFKRSTEELKLRYPNNEEGVSKTVKRKRKSEPKTVD-GQXXXXXXXXX 180
           STRDIGVQFNA EFK+STE LKLRYP NEEGV+ T  +K   + +  D            
Sbjct: 201 STRDIGVQFNANEFKKSTEGLKLRYP-NEEGVNNTDTKKTSRKKRKSDPSAQEATAENDE 259

Query: 181 XXMRYRFYESASARKRTVTAEERERAINDAKAFEPANPFCRVVLRPSYLYRGCIM 235
              RYRFYESASARKRTVTAEERERAIN++K FEP NPFCRVVLRPSYLYRGCIM
Sbjct: 260 EAERYRFYESASARKRTVTAEERERAINESKTFEPTNPFCRVVLRPSYLYRGCIM 314


>Medtr4g068320.1 | B3 domain transcription factor VRN1-like protein
           | HC | chr4:25619387-25622490 | 20130731
          Length = 429

 Score =  264 bits (675), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 143/235 (60%), Positives = 166/235 (70%), Gaps = 9/235 (3%)

Query: 2   YEGNSSFIVHIFNMSTSEVNYQSAVRSRNEGPVFTNYHHIFVEMEDTDSFEFMDSSPSNL 61
           YEG S F V+IF++ TSE+NYQS  +  NE  +F     IF EMED DS E M+SSP+ L
Sbjct: 84  YEGKSHFTVNIFSLPTSEINYQSPAQRSNEASLFGKRLTIFEEMEDEDSVEIMESSPTKL 143

Query: 62  TPGSLQNKVFGGSVDQLTPGKNQSP-ARQNLFNGGSKLNRVNWGDSGSPFPSKDANSQGN 120
           TP  LQNK   GS D+LTPGK++ P A QNLFNG SKLN +NWG+ G+  PS++ NS  N
Sbjct: 144 TPSLLQNKAVSGSADKLTPGKSRPPPALQNLFNG-SKLNSINWGEGGNT-PSRNDNSVDN 201

Query: 121 HSTRDIGVQFNAVEFKRSTEELKLRYPNNEEGVSKTVKRKRKSEPKTVDGQXXXXXXXXX 180
             TRDIG+QFN VEFK+S EELKLR   +E+ V KT  +KRKS     D Q         
Sbjct: 202 QLTRDIGLQFNVVEFKKSNEELKLRAATDEK-VKKTAVKKRKS-----DVQEPPSEHEDE 255

Query: 181 XXMRYRFYESASARKRTVTAEERERAINDAKAFEPANPFCRVVLRPSYLYRGCIM 235
             MR RFYESASARKRT TAEERE+AIN AK FEP+NPFCRVVLRPSYLYRGCIM
Sbjct: 256 VEMRNRFYESASARKRTATAEEREKAINAAKTFEPSNPFCRVVLRPSYLYRGCIM 310


>Medtr1g034210.2 | B3 domain transcription factor VRN1-like protein
           | LC | chr1:12425305-12431498 | 20130731
          Length = 324

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 42/49 (85%), Gaps = 1/49 (2%)

Query: 188 YESASARKR-TVTAEERERAINDAKAFEPANPFCRVVLRPSYLYRGCIM 235
           YESASAR R  V+ EERERA+N+A AFEP NP+CRV LRPSYLYRGCIM
Sbjct: 232 YESASARVRHNVSDEERERAMNEANAFEPTNPYCRVSLRPSYLYRGCIM 280


>Medtr1g034210.3 | B3 domain transcription factor VRN1-like protein
           | LC | chr1:12425305-12431498 | 20130731
          Length = 324

 Score = 81.3 bits (199), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 42/49 (85%), Gaps = 1/49 (2%)

Query: 188 YESASARKR-TVTAEERERAINDAKAFEPANPFCRVVLRPSYLYRGCIM 235
           YESASAR R  V+ EERERA+N+A AFEP NP+CRV LRPSYLYRGCIM
Sbjct: 232 YESASARVRHNVSDEERERAMNEANAFEPTNPYCRVSLRPSYLYRGCIM 280


>Medtr1g034210.1 | B3 domain transcription factor VRN1-like protein
           | LC | chr1:12425305-12428923 | 20130731
          Length = 370

 Score = 80.9 bits (198), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/49 (77%), Positives = 42/49 (85%), Gaps = 1/49 (2%)

Query: 188 YESASARKR-TVTAEERERAINDAKAFEPANPFCRVVLRPSYLYRGCIM 235
           YESASAR R  V+ EERERA+N+A AFEP NP+CRV LRPSYLYRGCIM
Sbjct: 232 YESASARVRHNVSDEERERAMNEANAFEPTNPYCRVSLRPSYLYRGCIM 280