Miyakogusa Predicted Gene

Lj0g3v0297489.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0297489.1 tr|G7KIE2|G7KIE2_MEDTR F-box family protein
OS=Medicago truncatula GN=MTR_6g042480 PE=4 SV=1,35.42,4e-16,seg,NULL;
F-box domain,F-box domain, cyclin-like; no
description,NULL,CUFF.19958.1
         (362 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g076190.1 | cyclin-like F-box protein | HC | chr7:28649715...   310   1e-84
Medtr6g042460.1 | F-box plant-like protein | LC | chr6:14661202-...   221   9e-58
Medtr0032s0060.1 | F-box plant-like protein | HC | scaffold0032:...   139   4e-33
Medtr6g042480.1 | DUF4283 domain protein | LC | chr6:14672878-14...    91   1e-18
Medtr0032s0050.1 | F-box-like protein | HC | scaffold0032:40832-...    63   4e-10

>Medtr7g076190.1 | cyclin-like F-box protein | HC |
           chr7:28649715-28655225 | 20130731
          Length = 377

 Score =  310 bits (794), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 162/330 (49%), Positives = 221/330 (66%), Gaps = 11/330 (3%)

Query: 1   MSEVKNNVDFIQLLEPDMSIKILNHLDDPCDLVRVSIVSSSWHRFVIENGLCKRLCLRMF 60
           MS + ++ DF+ L++ D S+KI   LDDP DLVRV  VS SW  FV+ NGL K+LCLRMF
Sbjct: 1   MSMMDHSNDFLSLIDIDTSLKIFKCLDDPADLVRVCCVSRSWRHFVVTNGLSKQLCLRMF 60

Query: 61  PEISHVAHSIELG-NMIEPVCNVLDNWE---CLKRNHKVYAFLA-SGLTPTWKNCISEAI 115
           P++S VA  +EL  N +    +V  +      L+++H+VY++ A S L+P   +CI++AI
Sbjct: 61  PQLSRVASVVELNQNGVNGQTDVGSSQSISPALQKDHRVYSYFANSCLSPVAVDCIAKAI 120

Query: 116 SASSTDNYPEESIQNTLEPRDRTENRLLYWSSKGESDPSVPETLGYQLISKLCLVTEIHV 175
            ASSTDN+P+ESI +TL+ RD    R  YWSS G+S+P+VPETL Y L S++C++TEI++
Sbjct: 121 GASSTDNFPQESIDHTLDERDNVAGRFSYWSSSGQSNPNVPETLTYHLTSQICVITEINI 180

Query: 176 QPFQAYFQHGFPIYSAKAVRFRMGHPRYPMELESLVADDMAANR-MLGD--SQFIWTYTS 232
           QPFQA+FQ G PIYSAK+VRF+MGH +    L+ L  + +   R  L D   +++WTYTS
Sbjct: 181 QPFQAHFQMGSPIYSAKSVRFKMGHLK--ASLDDLAGETIPKKRDNLADESEKYVWTYTS 238

Query: 233 PEFPMFQENRLQKFKLPEPXXXXXXXXXXXXXXRVQKQEMDELFYICISHVQVVGQPLSP 292
           PEFPM +ENRLQKF LPEP              RVQ+QEMD L YIC++HVQ +G  LSP
Sbjct: 239 PEFPMAKENRLQKFTLPEPVLCIGGILQIELLERVQRQEMDGLLYICVAHVQALGIQLSP 298

Query: 293 AFDIKIHHPSGKCTLKYFPQTDWCVPSTSS 322
           AF + +  PSG   LK   + + C P+ +S
Sbjct: 299 AFTVDVLGPSGMFVLKRNHRPN-CQPTVTS 327


>Medtr6g042460.1 | F-box plant-like protein | LC |
           chr6:14661202-14658162 | 20130731
          Length = 300

 Score =  221 bits (563), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 133/314 (42%), Positives = 171/314 (54%), Gaps = 56/314 (17%)

Query: 1   MSEVKNNVDFIQLLEPDMSIKILNHLD--DPCDLVRVSIVSSSWHRFVIENGLCKRLCLR 58
           MSE KN  DFIQ L  DMSI + NHL+  DPCDL+R S VS SW++FV++NGLCK+ C +
Sbjct: 1   MSEGKNTQDFIQCLGRDMSIDVFNHLNLNDPCDLIRASAVSKSWYQFVVKNGLCKKRCFK 60

Query: 59  MFPEISHVAHSIELGNMIEPVCN---VLDNWECLKRNHKVYAFLASGLTPTWKNCISEAI 115
           + PE+  V  SIE+ N+IEPV +   V  +WECLKRNHKVYA LA  L    KN I+  I
Sbjct: 61  LLPELIDVVDSIEVDNIIEPVSDMDGVCADWECLKRNHKVYAALAFHLARYVKNGITSKI 120

Query: 116 SASSTDNYPEESIQNTLEPRDRTENRLLYWSSKGESDPSVPETLGYQLISKLCLVTEIHV 175
            AS + N          E  D                  V E+L Y+L S +CL+T+I V
Sbjct: 121 EASYSLN----------ELGD------------------VLESLTYRLCSNICLITKIRV 152

Query: 176 QPFQAYFQHGFPIYSAKAVRFRMGHPRYPMELESLVADDMAANRMLGDSQFIWTYTSPEF 235
           QP+QA+ +   P+Y+   VRFR+G  + P                       WTYTSP +
Sbjct: 153 QPYQAFCEDDSPMYTYSTVRFRIGRVKTPSA---------------------WTYTSPHY 191

Query: 236 PMFQENRLQKFKLPEPXXXXXXXXXXXXXXRVQKQEMDELFYICISHVQVVGQPLSPAFD 295
            + QE   Q+ +LPEP              RV+K+     F I IS VQ+ G P S AFD
Sbjct: 192 SILQEKPWQELELPEPGLCNGGLLLVELLGRVKKK--GSTFEIGISQVQIEGLPTSEAFD 249

Query: 296 IKIHHPSGKCTLKY 309
           +KI+H SGK TLKY
Sbjct: 250 VKINHGSGKYTLKY 263


>Medtr0032s0060.1 | F-box plant-like protein | HC |
           scaffold0032:42293-44375 | 20130731
          Length = 185

 Score =  139 bits (350), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/235 (37%), Positives = 117/235 (49%), Gaps = 60/235 (25%)

Query: 59  MFPEISHVAHSIELGNMIEPVCNVLDNW---ECLKRNHKVYAFLASGLTPTWKNCISEAI 115
           M PEIS V HSIE+  MIE V N+L+ +   ECLKR+HK YA LA  L+P  KNC     
Sbjct: 1   MCPEISDVVHSIEVDYMIELVSNMLEGYRDLECLKRSHKAYAVLAFDLSPYVKNC----- 55

Query: 116 SASSTDNYPEESIQNTLEPRDRTENRLLYWSSKGESDPSVPETLGYQLISKLCLVTEIHV 175
                                                           IS+  + +  ++
Sbjct: 56  ------------------------------------------------ISEAVVASSTNI 67

Query: 176 QPFQAYFQHGFPIYSAKAVRFRMGHPRYPMELESLVADDMAANRMLGD-SQFIWTYTSPE 234
            P + YFQ G PIYSA+A+RFR+G+PRY   LES +A  +A++ M+ D +QF+W Y SP 
Sbjct: 68  DPEETYFQDGSPIYSAEAIRFRIGYPRYNRTLESAIAHSIASSNMVVDETQFLWIYISPN 127

Query: 235 FPMFQENRLQKFKLPEPXXXXXXXXXXXXXXRVQKQEMDELFYIC-ISHVQVVGQ 288
           + MFQENRLQ FKLP+P              R QKQ +  L+YI  +SH  ++  
Sbjct: 128 YQMFQENRLQVFKLPKPVLCNEHVLLVELHGRAQKQGL--LYYIGFVSHNDILSH 180


>Medtr6g042480.1 | DUF4283 domain protein | LC |
           chr6:14672878-14669959 | 20130731
          Length = 278

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 80/144 (55%), Gaps = 31/144 (21%)

Query: 41  SWHR-FVIENGLCKRLCLRMFPEISHVAHSIELGNMIEPVCNVLD---NWECLKRNHKVY 96
           +W + F+++NG+CK+ C +M PEI+ V  SIE+ N+ EP+ ++LD   +WE LKRNHKV 
Sbjct: 138 AWSKDFIVKNGICKKRCFKMLPEITDVVDSIEVDNITEPISDMLDVCEDWERLKRNHKVD 197

Query: 97  AFLASGLTPTWKNCISEAISASSTDNYPEESIQNTLEPRDRTENRLLYWSSKGESDPSVP 156
             LAS L    KN I+++I  + + N+    ++                           
Sbjct: 198 VVLASHLARYVKNGITKSIEETYSFNHELGDVR--------------------------- 230

Query: 157 ETLGYQLISKLCLVTEIHVQPFQA 180
           E++ Y+L S +CL+T+I VQP+Q 
Sbjct: 231 ESINYKLCSNICLITKIRVQPYQG 254


>Medtr0032s0050.1 | F-box-like protein | HC |
          scaffold0032:40832-41966 | 20130731
          Length = 78

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 34/45 (75%)

Query: 5  KNNVDFIQLLEPDMSIKILNHLDDPCDLVRVSIVSSSWHRFVIEN 49
          K  +DFIQ L PD+SIKIL  LDD CDLVRVS VS SW+RF I N
Sbjct: 12 KPKMDFIQCLGPDLSIKILTSLDDRCDLVRVSAVSKSWYRFEIPN 56