Miyakogusa Predicted Gene
- Lj0g3v0296609.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0296609.1 Non Characterized Hit- tr|K4BHJ8|K4BHJ8_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,55.56,3e-19,zf-C3HC4_3,NULL; ZF_RING_2,Zinc finger, RING-type;
no description,Zinc finger, RING/FYVE/PHD-type; I,TC79563.path1.1
(100 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr4g056600.1 | RING/U-box protein | HC | chr4:20801849-207945... 177 2e-45
Medtr4g056600.3 | RING/U-box protein | HC | chr4:20802079-207946... 177 2e-45
Medtr4g056600.4 | RING/U-box protein | HC | chr4:20802079-207945... 177 2e-45
Medtr4g056600.2 | RING/U-box protein | HC | chr4:20801849-207946... 177 2e-45
Medtr2g084475.4 | RING/U-box protein, putative | HC | chr2:35641... 172 6e-44
Medtr2g084475.2 | RING/U-box protein, putative | HC | chr2:35641... 172 6e-44
Medtr2g084475.3 | RING/U-box protein, putative | HC | chr2:35641... 172 7e-44
Medtr2g084475.5 | RING/U-box protein, putative | HC | chr2:35641... 172 7e-44
Medtr2g084475.1 | RING/U-box protein, putative | HC | chr2:35641... 172 7e-44
Medtr1g090803.1 | RING/U-box protein | HC | chr1:40822523-408290... 152 5e-38
Medtr1g090803.2 | RING/U-box protein | HC | chr1:40822523-408290... 152 5e-38
Medtr2g030405.1 | RING/U-box protein, putative | LC | chr2:11437... 79 1e-15
Medtr2g437720.1 | zinc finger, C3HC4 type (RING finger) protein ... 77 4e-15
Medtr4g094795.1 | zinc finger, C3HC4 type (RING finger) protein ... 69 7e-13
Medtr2g022210.1 | zinc finger, C3HC4 type (RING finger) protein ... 47 3e-06
Medtr6g092020.1 | calcium-dependent phospholipid-binding copine ... 47 3e-06
>Medtr4g056600.1 | RING/U-box protein | HC | chr4:20801849-20794537
| 20130731
Length = 818
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 89/99 (89%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRSI+QEVSAALNRSAGSSG +C+S D SKWECVRKGLCC+CCESNIDSLL
Sbjct: 719 MDMQLELQRSIKQEVSAALNRSAGSSGIRECDSLDDNSKWECVRKGLCCICCESNIDSLL 778
Query: 61 YRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
YRCGHLCTCS CANELLQ+ R CPMC APV+EVIR YSI
Sbjct: 779 YRCGHLCTCSGCANELLQSRRNCPMCHAPVLEVIRTYSI 817
>Medtr4g056600.3 | RING/U-box protein | HC | chr4:20802079-20794612
| 20130731
Length = 818
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 89/99 (89%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRSI+QEVSAALNRSAGSSG +C+S D SKWECVRKGLCC+CCESNIDSLL
Sbjct: 719 MDMQLELQRSIKQEVSAALNRSAGSSGIRECDSLDDNSKWECVRKGLCCICCESNIDSLL 778
Query: 61 YRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
YRCGHLCTCS CANELLQ+ R CPMC APV+EVIR YSI
Sbjct: 779 YRCGHLCTCSGCANELLQSRRNCPMCHAPVLEVIRTYSI 817
>Medtr4g056600.4 | RING/U-box protein | HC | chr4:20802079-20794537
| 20130731
Length = 818
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 89/99 (89%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRSI+QEVSAALNRSAGSSG +C+S D SKWECVRKGLCC+CCESNIDSLL
Sbjct: 719 MDMQLELQRSIKQEVSAALNRSAGSSGIRECDSLDDNSKWECVRKGLCCICCESNIDSLL 778
Query: 61 YRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
YRCGHLCTCS CANELLQ+ R CPMC APV+EVIR YSI
Sbjct: 779 YRCGHLCTCSGCANELLQSRRNCPMCHAPVLEVIRTYSI 817
>Medtr4g056600.2 | RING/U-box protein | HC | chr4:20801849-20794612
| 20130731
Length = 818
Score = 177 bits (449), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 83/99 (83%), Positives = 89/99 (89%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRSI+QEVSAALNRSAGSSG +C+S D SKWECVRKGLCC+CCESNIDSLL
Sbjct: 719 MDMQLELQRSIKQEVSAALNRSAGSSGIRECDSLDDNSKWECVRKGLCCICCESNIDSLL 778
Query: 61 YRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
YRCGHLCTCS CANELLQ+ R CPMC APV+EVIR YSI
Sbjct: 779 YRCGHLCTCSGCANELLQSRRNCPMCHAPVLEVIRTYSI 817
>Medtr2g084475.4 | RING/U-box protein, putative | HC |
chr2:35641571-35646787 | 20130731
Length = 860
Score = 172 bits (436), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 90/99 (90%), Gaps = 1/99 (1%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRSIRQEVSAALNRS GSSG HD SPD +SKWECVRKGLCC+CCE +ID LL
Sbjct: 763 MDMQLELQRSIRQEVSAALNRSTGSSGVHDHVSPD-ESKWECVRKGLCCICCEGSIDCLL 821
Query: 61 YRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
YRCGH+CTCSKCAN+LL + +KCPMC+APVVEVIRAYSI
Sbjct: 822 YRCGHMCTCSKCANQLLDSRKKCPMCRAPVVEVIRAYSI 860
>Medtr2g084475.2 | RING/U-box protein, putative | HC |
chr2:35641571-35646787 | 20130731
Length = 860
Score = 172 bits (436), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 90/99 (90%), Gaps = 1/99 (1%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRSIRQEVSAALNRS GSSG HD SPD +SKWECVRKGLCC+CCE +ID LL
Sbjct: 763 MDMQLELQRSIRQEVSAALNRSTGSSGVHDHVSPD-ESKWECVRKGLCCICCEGSIDCLL 821
Query: 61 YRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
YRCGH+CTCSKCAN+LL + +KCPMC+APVVEVIRAYSI
Sbjct: 822 YRCGHMCTCSKCANQLLDSRKKCPMCRAPVVEVIRAYSI 860
>Medtr2g084475.3 | RING/U-box protein, putative | HC |
chr2:35641571-35646787 | 20130731
Length = 835
Score = 172 bits (436), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 90/99 (90%), Gaps = 1/99 (1%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRSIRQEVSAALNRS GSSG HD SPD +SKWECVRKGLCC+CCE +ID LL
Sbjct: 738 MDMQLELQRSIRQEVSAALNRSTGSSGVHDHVSPD-ESKWECVRKGLCCICCEGSIDCLL 796
Query: 61 YRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
YRCGH+CTCSKCAN+LL + +KCPMC+APVVEVIRAYSI
Sbjct: 797 YRCGHMCTCSKCANQLLDSRKKCPMCRAPVVEVIRAYSI 835
>Medtr2g084475.5 | RING/U-box protein, putative | HC |
chr2:35641571-35646787 | 20130731
Length = 835
Score = 172 bits (436), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 90/99 (90%), Gaps = 1/99 (1%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRSIRQEVSAALNRS GSSG HD SPD +SKWECVRKGLCC+CCE +ID LL
Sbjct: 738 MDMQLELQRSIRQEVSAALNRSTGSSGVHDHVSPD-ESKWECVRKGLCCICCEGSIDCLL 796
Query: 61 YRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
YRCGH+CTCSKCAN+LL + +KCPMC+APVVEVIRAYSI
Sbjct: 797 YRCGHMCTCSKCANQLLDSRKKCPMCRAPVVEVIRAYSI 835
>Medtr2g084475.1 | RING/U-box protein, putative | HC |
chr2:35641571-35646787 | 20130731
Length = 835
Score = 172 bits (436), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 82/99 (82%), Positives = 90/99 (90%), Gaps = 1/99 (1%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRSIRQEVSAALNRS GSSG HD SPD +SKWECVRKGLCC+CCE +ID LL
Sbjct: 738 MDMQLELQRSIRQEVSAALNRSTGSSGVHDHVSPD-ESKWECVRKGLCCICCEGSIDCLL 796
Query: 61 YRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
YRCGH+CTCSKCAN+LL + +KCPMC+APVVEVIRAYSI
Sbjct: 797 YRCGHMCTCSKCANQLLDSRKKCPMCRAPVVEVIRAYSI 835
>Medtr1g090803.1 | RING/U-box protein | HC | chr1:40822523-40829027
| 20130731
Length = 851
Score = 152 bits (385), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 72/99 (72%), Positives = 86/99 (86%), Gaps = 1/99 (1%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRS+RQEVSAALNRSAG +G S DG SKW V+KG CCVCC+++IDSLL
Sbjct: 753 MDMQLELQRSVRQEVSAALNRSAGENGLAAGTSDDG-SKWGHVKKGTCCVCCDNHIDSLL 811
Query: 61 YRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
YRCGH+CTCSKCA+EL++ G KCP+C+AP+VEV+RAYSI
Sbjct: 812 YRCGHMCTCSKCASELIRGGGKCPLCRAPIVEVVRAYSI 850
>Medtr1g090803.2 | RING/U-box protein | HC | chr1:40822523-40829027
| 20130731
Length = 851
Score = 152 bits (385), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 72/99 (72%), Positives = 86/99 (86%), Gaps = 1/99 (1%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRS+RQEVSAALNRSAG +G S DG SKW V+KG CCVCC+++IDSLL
Sbjct: 753 MDMQLELQRSVRQEVSAALNRSAGENGLAAGTSDDG-SKWGHVKKGTCCVCCDNHIDSLL 811
Query: 61 YRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYSI 99
YRCGH+CTCSKCA+EL++ G KCP+C+AP+VEV+RAYSI
Sbjct: 812 YRCGHMCTCSKCASELIRGGGKCPLCRAPIVEVVRAYSI 850
>Medtr2g030405.1 | RING/U-box protein, putative | LC |
chr2:11437138-11439522 | 20130731
Length = 677
Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/74 (58%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 1 MDMQLELQRSIRQEVSAALNRSAGSSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLL 60
MDMQLELQRSIRQE SA LNRS GSSG HD SPD +SKWECV KGL ++ L+
Sbjct: 587 MDMQLELQRSIRQEFSAVLNRSTGSSGVHDHVSPD-ESKWECVTKGLAVYAAKA---ILI 642
Query: 61 YRCGHLCTCSKCAN 74
C + TC+ N
Sbjct: 643 VCCTDVGTCAHVQN 656
>Medtr2g437720.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:14865351-14860695 | 20130731
Length = 915
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 46/67 (68%)
Query: 31 CESPDGKSKWECVRKGLCCVCCESNIDSLLYRCGHLCTCSKCANELLQNGRKCPMCQAPV 90
E + KS + +KG CC+C E +DS+LYRCGH+C C KCAN+L N KCP+C+A +
Sbjct: 846 AEKEEKKSHNKTGKKGNCCICNEMKVDSVLYRCGHMCACLKCANDLRWNNGKCPICRANI 905
Query: 91 VEVIRAY 97
+V+R Y
Sbjct: 906 DDVVRVY 912
>Medtr4g094795.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr4:39016144-39012687 | 20130731
Length = 817
Score = 69.3 bits (168), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 40/53 (75%)
Query: 46 GLCCVCCESNIDSLLYRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVIRAYS 98
G+CC+C E+ ++S+LYRCGH+C C CANEL KCP+CQ +++V++ ++
Sbjct: 763 GMCCICNENKVNSVLYRCGHMCACLNCANELQWKSGKCPICQVAIIDVVKVHT 815
>Medtr2g022210.1 | zinc finger, C3HC4 type (RING finger) protein |
HC | chr2:7631733-7637979 | 20130731
Length = 386
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 48 CCVCCESNIDSLLYRCGHLCTCSKCANELLQNGRKCPMCQAPVVEVI 94
C +C D+ + C H+C CS+CA L KCP+C+ P+ E++
Sbjct: 331 CVICMTEPKDTAVLPCRHMCLCSECAKALRLQSNKCPICRQPIEELM 377
>Medtr6g092020.1 | calcium-dependent phospholipid-binding copine
family protein | HC | chr6:34700782-34696694 | 20130731
Length = 396
Score = 47.4 bits (111), Expect = 3e-06, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)
Query: 25 SSGTHDCESPDGKSKWECVRKGLCCVCCESNIDSLLYRCGHLCTCSKCANELLQNGRKCP 84
S H + D +++ ++ CC C +N L + CGH+ TC C + L R CP
Sbjct: 327 SRPAHSNSTTDDQNQSVSIKSNACCPVCLTNAKDLAFGCGHM-TCRDCGSRL----RHCP 381
Query: 85 MCQAPVVEVIRAYS 98
+C+ + +R YS
Sbjct: 382 ICRHRITSRLRVYS 395