Miyakogusa Predicted Gene
- Lj0g3v0296599.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0296599.1 Non Characterized Hit- tr|I1LTP2|I1LTP2_SOYBN
Uncharacterized protein OS=Glycine max PE=4
SV=1,61.63,4e-16,seg,NULL,TC78959.path2.1
(87 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr2g030405.1 | RING/U-box protein, putative | LC | chr2:11437... 77 5e-15
Medtr2g084475.4 | RING/U-box protein, putative | HC | chr2:35641... 72 1e-13
Medtr2g084475.2 | RING/U-box protein, putative | HC | chr2:35641... 72 1e-13
Medtr2g084475.3 | RING/U-box protein, putative | HC | chr2:35641... 72 1e-13
Medtr2g084475.5 | RING/U-box protein, putative | HC | chr2:35641... 72 1e-13
Medtr2g084475.1 | RING/U-box protein, putative | HC | chr2:35641... 72 1e-13
Medtr4g056600.1 | RING/U-box protein | HC | chr4:20801849-207945... 67 3e-12
Medtr4g056600.3 | RING/U-box protein | HC | chr4:20802079-207946... 67 3e-12
Medtr4g056600.4 | RING/U-box protein | HC | chr4:20802079-207945... 67 3e-12
Medtr4g056600.2 | RING/U-box protein | HC | chr4:20801849-207946... 67 3e-12
>Medtr2g030405.1 | RING/U-box protein, putative | LC |
chr2:11437138-11439522 | 20130731
Length = 677
Score = 76.6 bits (187), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 56/103 (54%), Gaps = 16/103 (15%)
Query: 1 MEWE-LQETTPSSASVEQDLEQQSRDQIVDQEDTXXXXXXXXXXXXXXXXXXWDQHHHRD 59
+EWE LQETTPSS+S EQDLEQQ RDQIVD ED WD+H D
Sbjct: 469 VEWEELQETTPSSSSTEQDLEQQRRDQIVDTEDIVNNSLNLPLPPPPPPLPLWDRHTRHD 528
Query: 60 SW-QHNDINNQRLGM--------------DWEIVNDLRIDMAR 87
+W Q N INNQR G DW+ ++DLRIDM R
Sbjct: 529 NWTQQNGINNQRRGTVNSFAGHNRFPLADDWDNISDLRIDMVR 571
>Medtr2g084475.4 | RING/U-box protein, putative | HC |
chr2:35641571-35646787 | 20130731
Length = 860
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 1 MEWE-LQETTPSSASVEQDLEQQSRDQIVDQED-TXXXXXXXXXXXXXXXXXXWDQHHHR 58
+EWE LQETTPSS+S EQDLEQQ RDQIVD ED WD+H
Sbjct: 644 VEWEELQETTPSSSSTEQDLEQQRRDQIVDTEDIVNNSLNLPLPPPPPPLPPLWDRHSRH 703
Query: 59 DSW-QHNDINNQRLGM--------------DWEIVNDLRIDMAR 87
D+W Q N INNQR G DW+ ++DLRIDM R
Sbjct: 704 DNWTQQNGINNQRRGTVNSFAGHNRFPLADDWDNISDLRIDMVR 747
>Medtr2g084475.2 | RING/U-box protein, putative | HC |
chr2:35641571-35646787 | 20130731
Length = 860
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 1 MEWE-LQETTPSSASVEQDLEQQSRDQIVDQED-TXXXXXXXXXXXXXXXXXXWDQHHHR 58
+EWE LQETTPSS+S EQDLEQQ RDQIVD ED WD+H
Sbjct: 644 VEWEELQETTPSSSSTEQDLEQQRRDQIVDTEDIVNNSLNLPLPPPPPPLPPLWDRHSRH 703
Query: 59 DSW-QHNDINNQRLGM--------------DWEIVNDLRIDMAR 87
D+W Q N INNQR G DW+ ++DLRIDM R
Sbjct: 704 DNWTQQNGINNQRRGTVNSFAGHNRFPLADDWDNISDLRIDMVR 747
>Medtr2g084475.3 | RING/U-box protein, putative | HC |
chr2:35641571-35646787 | 20130731
Length = 835
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 1 MEWE-LQETTPSSASVEQDLEQQSRDQIVDQED-TXXXXXXXXXXXXXXXXXXWDQHHHR 58
+EWE LQETTPSS+S EQDLEQQ RDQIVD ED WD+H
Sbjct: 619 VEWEELQETTPSSSSTEQDLEQQRRDQIVDTEDIVNNSLNLPLPPPPPPLPPLWDRHSRH 678
Query: 59 DSW-QHNDINNQRLGM--------------DWEIVNDLRIDMAR 87
D+W Q N INNQR G DW+ ++DLRIDM R
Sbjct: 679 DNWTQQNGINNQRRGTVNSFAGHNRFPLADDWDNISDLRIDMVR 722
>Medtr2g084475.5 | RING/U-box protein, putative | HC |
chr2:35641571-35646787 | 20130731
Length = 835
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 1 MEWE-LQETTPSSASVEQDLEQQSRDQIVDQED-TXXXXXXXXXXXXXXXXXXWDQHHHR 58
+EWE LQETTPSS+S EQDLEQQ RDQIVD ED WD+H
Sbjct: 619 VEWEELQETTPSSSSTEQDLEQQRRDQIVDTEDIVNNSLNLPLPPPPPPLPPLWDRHSRH 678
Query: 59 DSW-QHNDINNQRLGM--------------DWEIVNDLRIDMAR 87
D+W Q N INNQR G DW+ ++DLRIDM R
Sbjct: 679 DNWTQQNGINNQRRGTVNSFAGHNRFPLADDWDNISDLRIDMVR 722
>Medtr2g084475.1 | RING/U-box protein, putative | HC |
chr2:35641571-35646787 | 20130731
Length = 835
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 56/104 (53%), Gaps = 17/104 (16%)
Query: 1 MEWE-LQETTPSSASVEQDLEQQSRDQIVDQED-TXXXXXXXXXXXXXXXXXXWDQHHHR 58
+EWE LQETTPSS+S EQDLEQQ RDQIVD ED WD+H
Sbjct: 619 VEWEELQETTPSSSSTEQDLEQQRRDQIVDTEDIVNNSLNLPLPPPPPPLPPLWDRHSRH 678
Query: 59 DSW-QHNDINNQRLGM--------------DWEIVNDLRIDMAR 87
D+W Q N INNQR G DW+ ++DLRIDM R
Sbjct: 679 DNWTQQNGINNQRRGTVNSFAGHNRFPLADDWDNISDLRIDMVR 722
>Medtr4g056600.1 | RING/U-box protein | HC | chr4:20801849-20794537
| 20130731
Length = 818
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 13/87 (14%)
Query: 1 MEWELQETTPSSASVEQDLEQQSRDQIVDQEDTXXXXXXXXXXXXXXXXXXWDQHHHRDS 60
MEW+ +E PS+ +LEQQS+DQIVDQE T WDQH H D+
Sbjct: 630 MEWDPEEAAPSA-----NLEQQSQDQIVDQEGTVNSPLDLPSLPTPPTPPLWDQHPHGDN 684
Query: 61 WQHNDINNQRLGMDWEIVNDLRIDMAR 87
W HND D EI+NDLR+DMAR
Sbjct: 685 WSHND--------DLEIINDLRLDMAR 703
>Medtr4g056600.3 | RING/U-box protein | HC | chr4:20802079-20794612
| 20130731
Length = 818
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 13/87 (14%)
Query: 1 MEWELQETTPSSASVEQDLEQQSRDQIVDQEDTXXXXXXXXXXXXXXXXXXWDQHHHRDS 60
MEW+ +E PS+ +LEQQS+DQIVDQE T WDQH H D+
Sbjct: 630 MEWDPEEAAPSA-----NLEQQSQDQIVDQEGTVNSPLDLPSLPTPPTPPLWDQHPHGDN 684
Query: 61 WQHNDINNQRLGMDWEIVNDLRIDMAR 87
W HND D EI+NDLR+DMAR
Sbjct: 685 WSHND--------DLEIINDLRLDMAR 703
>Medtr4g056600.4 | RING/U-box protein | HC | chr4:20802079-20794537
| 20130731
Length = 818
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 13/87 (14%)
Query: 1 MEWELQETTPSSASVEQDLEQQSRDQIVDQEDTXXXXXXXXXXXXXXXXXXWDQHHHRDS 60
MEW+ +E PS+ +LEQQS+DQIVDQE T WDQH H D+
Sbjct: 630 MEWDPEEAAPSA-----NLEQQSQDQIVDQEGTVNSPLDLPSLPTPPTPPLWDQHPHGDN 684
Query: 61 WQHNDINNQRLGMDWEIVNDLRIDMAR 87
W HND D EI+NDLR+DMAR
Sbjct: 685 WSHND--------DLEIINDLRLDMAR 703
>Medtr4g056600.2 | RING/U-box protein | HC | chr4:20801849-20794612
| 20130731
Length = 818
Score = 67.4 bits (163), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 48/87 (55%), Gaps = 13/87 (14%)
Query: 1 MEWELQETTPSSASVEQDLEQQSRDQIVDQEDTXXXXXXXXXXXXXXXXXXWDQHHHRDS 60
MEW+ +E PS+ +LEQQS+DQIVDQE T WDQH H D+
Sbjct: 630 MEWDPEEAAPSA-----NLEQQSQDQIVDQEGTVNSPLDLPSLPTPPTPPLWDQHPHGDN 684
Query: 61 WQHNDINNQRLGMDWEIVNDLRIDMAR 87
W HND D EI+NDLR+DMAR
Sbjct: 685 WSHND--------DLEIINDLRLDMAR 703