Miyakogusa Predicted Gene

Lj0g3v0296239.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0296239.1 tr|Q20563|Q20563_CAEEL Protein TAF-11.1
OS=Caenorhabditis elegans GN=taf-11.1 PE=2
SV=1,40.16,3e-19,Histone-fold,Histone-fold; SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,TAFII28-like protein; TAFII28,,CUFF.19850.1
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g047200.1 | transcription initiation factor TFIID, subunit...   248   3e-66
Medtr0085s0030.1 | hTAFII28-like motif protein | HC | scaffold00...   157   7e-39

>Medtr1g047200.1 | transcription initiation factor TFIID, subunit
           TAF11 | HC | chr1:17814615-17817715 | 20130731
          Length = 203

 Score =  248 bits (632), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 127/203 (62%), Positives = 138/203 (67%), Gaps = 21/203 (10%)

Query: 1   MKQSKDPFEAAFVESPPESPVQAQEDDXXXXXXXXXXXXXXXXXXXXXXXXXXX------ 54
           MKQSKDPFEAAF ESPPESP++ + D                                  
Sbjct: 1   MKQSKDPFEAAFEESPPESPIETEPDPDASTENPNSTNSSLPQSTLTHEEEHNHIKTPNS 60

Query: 55  ---------------XXNMDVELTKLQPTGDPQKMAKMQAILSQFTEEQMSRYESFRRAG 99
                            NMDVEL K    GDP KMAKMQAILSQFTEEQMSRYESFRRAG
Sbjct: 61  NNTITKHKDEEDDEEEDNMDVELAKFPTAGDPHKMAKMQAILSQFTEEQMSRYESFRRAG 120

Query: 100 FQKANMKRLLASITGTQKITIPITIVVSGIAKMFVGEVVETARIVIKERKESGPIRPCHL 159
           FQKANMKRLL SITGTQKI+IPITI VSGIAK+FVGEVVETAR ++KERKE+GPIRPCHL
Sbjct: 121 FQKANMKRLLTSITGTQKISIPITIAVSGIAKVFVGEVVETARTIMKERKETGPIRPCHL 180

Query: 160 REAYRRLKLEGKVFKRSVPRLFR 182
           REA+RRLKLEGK+FKR+  RLFR
Sbjct: 181 REAHRRLKLEGKIFKRTTSRLFR 203


>Medtr0085s0030.1 | hTAFII28-like motif protein | HC |
           scaffold0085:49006-52109 | 20130731
          Length = 160

 Score =  157 bits (396), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 85/160 (53%), Positives = 95/160 (59%), Gaps = 20/160 (12%)

Query: 1   MKQSKDPFEAAFVESPPESPVQAQ--------------------EDDXXXXXXXXXXXXX 40
           MKQSKDPFEAAF ESPP+SP + +                    +               
Sbjct: 1   MKQSKDPFEAAFEESPPDSPTETEPEPVNPNSNSLISQPSQIHEQQHLHVKNTISNDTKN 60

Query: 41  XXXXXXXXXXXXXXXXNMDVELTKLQPTGDPQKMAKMQAILSQFTEEQMSRYESFRRAGF 100
                           NMDVEL K +  GDP KMAKM +ILSQFT+EQMSRYESFRRAGF
Sbjct: 61  NSNNKDDEEDEEEDEDNMDVELAKFRAVGDPHKMAKMHSILSQFTDEQMSRYESFRRAGF 120

Query: 101 QKANMKRLLASITGTQKITIPITIVVSGIAKMFVGEVVET 140
           QKA M R+LASI GTQ ++ PITIVVSGIAKMFVGEVVET
Sbjct: 121 QKAKMTRVLASIIGTQTVSQPITIVVSGIAKMFVGEVVET 160