Miyakogusa Predicted Gene

Lj0g3v0296009.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0296009.1 Non Characterized Hit- tr|F6GX70|F6GX70_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,47.79,0.0000000005,seg,NULL; DUF1713,Domain of unknown function
DUF1713, mitochondria,CUFF.19829.1
         (131 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g093790.1 | DUF1713 domain protein | HC | chr1:42085823-42...   108   1e-24

>Medtr1g093790.1 | DUF1713 domain protein | HC |
           chr1:42085823-42083781 | 20130731
          Length = 135

 Score =  108 bits (271), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 63/131 (48%), Positives = 76/131 (58%), Gaps = 5/131 (3%)

Query: 1   MASALQKLLRKSPTPTRFITAFHPSQSPPNPIVALNRGECDSXXXXXXXXXXXXXXQHFI 60
           M S  QKLL+K P+ +RF+ AFHP Q+P NPI+ LN+G                    F+
Sbjct: 10  MISLFQKLLKKPPS-SRFVAAFHPLQTP-NPIIPLNQGH---DLPTETLPTSPILTHQFV 64

Query: 61  GSSCSDVIFPSFPFGFDSKPDFASGFLSPVAEDPRLEGSETLWADSVXXXXXXXXXXXXX 120
           GSS S +IFPSFPFGF SKP   +G LS VAED  LE ++TLWADSV             
Sbjct: 65  GSSSSTLIFPSFPFGFASKPVLENGILSHVAEDAELEDAQTLWADSVKKKRKKKMNKHKY 124

Query: 121 XXLRKRIRRQT 131
             LRKR+RRQT
Sbjct: 125 QKLRKRMRRQT 135