Miyakogusa Predicted Gene

Lj0g3v0295039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0295039.1 Non Characterized Hit- tr|J3L3G8|J3L3G8_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB01G3,100,0.0000000000005, ,CUFF.19765.1
         (63 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g468990.3 | alpha amylase domain protein | HC | chr8:25017...    75   2e-14
Medtr8g468990.2 | alpha amylase domain protein | HC | chr8:25017...    75   2e-14
Medtr8g468990.1 | alpha amylase domain protein | HC | chr8:25017...    75   2e-14
Medtr7g013300.1 | alpha amylase domain protein | HC | chr7:38376...    67   4e-12
Medtr7g013300.2 | alpha amylase domain protein | HC | chr7:38376...    67   4e-12
Medtr1g026170.1 | alpha amylase domain protein | HC | chr1:84558...    49   1e-06

>Medtr8g468990.3 | alpha amylase domain protein | HC |
           chr8:25017230-25009440 | 20130731
          Length = 764

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/34 (91%), Positives = 34/34 (100%)

Query: 30  GRGNKSSGDNFHAAPNIDHSQEFVRNDLKEWLCW 63
           GRGNKSSGD+FHAAPNIDHSQ+FVRND+KEWLCW
Sbjct: 495 GRGNKSSGDSFHAAPNIDHSQDFVRNDIKEWLCW 528


>Medtr8g468990.2 | alpha amylase domain protein | HC |
           chr8:25017934-25009440 | 20130731
          Length = 823

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/34 (91%), Positives = 34/34 (100%)

Query: 30  GRGNKSSGDNFHAAPNIDHSQEFVRNDLKEWLCW 63
           GRGNKSSGD+FHAAPNIDHSQ+FVRND+KEWLCW
Sbjct: 644 GRGNKSSGDSFHAAPNIDHSQDFVRNDIKEWLCW 677


>Medtr8g468990.1 | alpha amylase domain protein | HC |
           chr8:25017934-25009440 | 20130731
          Length = 913

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/34 (91%), Positives = 34/34 (100%)

Query: 30  GRGNKSSGDNFHAAPNIDHSQEFVRNDLKEWLCW 63
           GRGNKSSGD+FHAAPNIDHSQ+FVRND+KEWLCW
Sbjct: 644 GRGNKSSGDSFHAAPNIDHSQDFVRNDIKEWLCW 677


>Medtr7g013300.1 | alpha amylase domain protein | HC |
           chr7:3837657-3823104 | 20130731
          Length = 962

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 30/34 (88%)

Query: 30  GRGNKSSGDNFHAAPNIDHSQEFVRNDLKEWLCW 63
           GRGN SSGD FHAAPNIDHSQEFVR D+KEWL W
Sbjct: 691 GRGNPSSGDIFHAAPNIDHSQEFVRKDIKEWLNW 724


>Medtr7g013300.2 | alpha amylase domain protein | HC |
           chr7:3837686-3823076 | 20130731
          Length = 962

 Score = 67.0 bits (162), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 30/34 (88%)

Query: 30  GRGNKSSGDNFHAAPNIDHSQEFVRNDLKEWLCW 63
           GRGN SSGD FHAAPNIDHSQEFVR D+KEWL W
Sbjct: 691 GRGNPSSGDIFHAAPNIDHSQEFVRKDIKEWLNW 724


>Medtr1g026170.1 | alpha amylase domain protein | HC |
           chr1:8455846-8461251 | 20130731
          Length = 432

 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 22  RLKTFESFGRGNKSSGDNFHAAPNIDHSQEFVRNDLKEWLCW 63
           R  T  + G GN+++G  FH  PNIDH+Q+FVR D+  WL W
Sbjct: 158 RAVTSSTGGLGNRNTGAIFHGFPNIDHTQDFVRKDIIGWLQW 199