Miyakogusa Predicted Gene

Lj0g3v0294529.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0294529.1 tr|G8XS16|G8XS16_9ASTR Homogentisate
phytylprenyltransferase OS=Artemisia sphaerocephala PE=2
SV=1,54.02,8e-19,UbiA,UbiA prenyltransferase family;
BACTERIOCHLOROPHYLL SYNTHASE,NULL;
PRENYLTRANSFERASES,NULL,TC67425.path1.1
         (117 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g054305.1 | homogentisate phytyltransferase | HC | chr1:23...   113   4e-26
Medtr4g127800.3 | homogentisate phytyltransferase | HC | chr4:53...    57   4e-09
Medtr4g127800.1 | homogentisate phytyltransferase | HC | chr4:53...    57   4e-09
Medtr4g127800.2 | homogentisate phytyltransferase | HC | chr4:53...    57   4e-09

>Medtr1g054305.1 | homogentisate phytyltransferase | HC |
           chr1:23377123-23369732 | 20130731
          Length = 392

 Score =  113 bits (282), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 68/87 (78%)

Query: 1   MKWSFWFKAVSTLFALLCANIYIVGINQIYDISVDKINKPHLPIASGEISVRLAWLLVIY 60
           +KWS   KA+S LFAL+C N YIVGINQIYDI +DK+NKP+LPIA+G++SV+ AW LVI+
Sbjct: 131 IKWSLLLKALSGLFALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWYLVIF 190

Query: 61  FTAAGLLVVGFTSGPLLFSLYALRICL 87
           F AAGLL VG   G  +FSLY+  + L
Sbjct: 191 FAAAGLLTVGLNFGSFIFSLYSFGLFL 217


>Medtr4g127800.3 | homogentisate phytyltransferase | HC |
           chr4:53138714-53131274 | 20130731
          Length = 411

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 15  ALLCANIYIVGINQIYDISVDKINKPHLPIASGEISVRLAWLLVI 59
           A L  NIYIVG+NQ+ D+ +DKINKP+LP+ASGE S     ++V+
Sbjct: 162 AALFMNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFATGAIIVV 206


>Medtr4g127800.1 | homogentisate phytyltransferase | HC |
           chr4:53139111-53131266 | 20130731
          Length = 411

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 15  ALLCANIYIVGINQIYDISVDKINKPHLPIASGEISVRLAWLLVI 59
           A L  NIYIVG+NQ+ D+ +DKINKP+LP+ASGE S     ++V+
Sbjct: 162 AALFMNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFATGAIIVV 206


>Medtr4g127800.2 | homogentisate phytyltransferase | HC |
           chr4:53138796-53131274 | 20130731
          Length = 411

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%)

Query: 15  ALLCANIYIVGINQIYDISVDKINKPHLPIASGEISVRLAWLLVI 59
           A L  NIYIVG+NQ+ D+ +DKINKP+LP+ASGE S     ++V+
Sbjct: 162 AALFMNIYIVGLNQLSDVEIDKINKPYLPLASGEYSFATGAIIVV 206