Miyakogusa Predicted Gene

Lj0g3v0294399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0294399.1 tr|Q6J724|Q6J724_RAT BRCA1-associated RING domain
protein 1 beta isoform OS=Rattus norvegicus
GN=Bar,29.41,3e-18,ZF_RING_1,Zinc finger, RING-type, conserved site;
BRCT,BRCT domain; zf-HC5HC2H,NULL;
zf-C3HC4_2,NULL,NODE_60048_length_2303_cov_14.995224.path1.1
         (708 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g098170.1 | breast cancer susceptibility protein, putative...   949   0.0  
Medtr2g018880.1 | breast cancer susceptibility-like protein, put...   360   3e-99
Medtr2g078630.1 | P-loop nucleoside triphosphate hydrolase super...    83   1e-15
Medtr1g087290.2 | DNA replication regulator dpb11, putative | HC...    55   3e-07
Medtr1g087290.1 | DNA replication regulator dpb11, putative | HC...    55   3e-07

>Medtr7g098170.1 | breast cancer susceptibility protein, putative |
           HC | chr7:39230788-39237133 | 20130731
          Length = 687

 Score =  949 bits (2454), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/710 (67%), Positives = 560/710 (78%), Gaps = 27/710 (3%)

Query: 1   MEDSGKP--NNKSKLMNPWMLHFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSS 58
           ME+SGK   NN +KL+NPWMLHFQKLALELKCPLCL+LF+KPVLLPC+HLFC SCL DS+
Sbjct: 1   MENSGKSIMNNNTKLLNPWMLHFQKLALELKCPLCLNLFKKPVLLPCNHLFCSSCLADST 60

Query: 59  LSGSECAVCKTKYAQTDIRNVPFVENMVAIYRSLDASFCASMLQQRSNDDSRVLQQCQTF 118
              SECA+C TK +Q DIR++PFVE++V IY+SLDA+FCA+  QQRS+D++RVL+QCQT 
Sbjct: 61  SIRSECALCNTKCSQKDIRHLPFVESIVTIYKSLDATFCANAFQQRSSDNTRVLEQCQTL 120

Query: 119 RDSSYSNIKKADNFSQSSPNSNGFGVGENRKSMITMHVKPEELEMSSGGRAGFRNDVKPY 178
            +S++SN  K D   Q+S  SN  GVG+N +S I M+ K +E+EMS   + G  N +   
Sbjct: 121 HNSAFSN--KVDKVLQNSCMSNEVGVGKNHQSGIKMNGKAKEVEMSC--KRGADNHIAEK 176

Query: 179 PMQRSRVEIGDYVEMDVNQVTQAAVYSPPFCDTKGSDNDCSELDSDHPFN-PEILENSSL 237
           P             M++NQ TQ+   SPPFCDTKGSDN CS+L+S+ P +      +S  
Sbjct: 177 PDS-----------MNLNQATQSEPDSPPFCDTKGSDNGCSDLNSEKPLSLGRSESSSFK 225

Query: 238 KRASTGKGNLKERKSQFRSESSASETDKPTRDLKRKKYLTKGDDHIQHVSTHHSKLVDSH 297
           + ++TGKGNLKER   F SESSASE +  TRDLKR+K LT  D  +Q  +++H+KLVDS 
Sbjct: 226 RSSTTGKGNLKERMPHFWSESSASENEDLTRDLKRQKNLTNEDGIVQQSTSYHNKLVDSR 285

Query: 298 CGLDLKSGKEPGELLPANIPIDLNPSTSICSFCQSSETSEATGPMLHYANGKSVIGDAAM 357
           C L++KS K+ G L+P+N P DL PSTSICSFCQSS+ SEATG MLHYA+G SV G+AAM
Sbjct: 286 CDLEIKSDKDTGALVPSNAPSDLYPSTSICSFCQSSKISEATGSMLHYASGISVTGEAAM 345

Query: 358 QPNVIHVHRCCVDWAPQVYFVDETCKNLKAEVARGAKLKCSTCGLKGAALGCYVKSCKRT 417
           +PNV+HVH+ C+DWAPQVYFV ET KNLKAEVARGAKLKC+ CG KGAALGCYVKSC+RT
Sbjct: 346 EPNVVHVHKVCIDWAPQVYFVGETVKNLKAEVARGAKLKCTKCGKKGAALGCYVKSCRRT 405

Query: 418 YHVPCAMDVSTCRWDQEKYLLLCPVHSNAKFPHEKSRPKKQATQEHPASAHLSSQLSNPL 477
           YHVPCAMD+S CRWD   YLLLCP HSN KFP+EKS   KQATQ+HP S+HL SQ SN L
Sbjct: 406 YHVPCAMDISACRWDHVDYLLLCPSHSNVKFPNEKSNLDKQATQKHPVSSHLPSQQSNQL 465

Query: 478 GAFHDDGKKVVFCGSALSDEEKVLLINFASKVGATVTKFWTSDVTHVIAATDANGACSRT 537
           GA   DGKK+VFCGSALS+EEKVLLINFASKVGATV+K WTSDVTHVIAATDANGACSRT
Sbjct: 466 GAVQGDGKKMVFCGSALSNEEKVLLINFASKVGATVSKCWTSDVTHVIAATDANGACSRT 525

Query: 538 LKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYEISLDNQGCNGGPKAGRLSALANEPK 597
           LKVL AILNG+W+LK+DWI+ACMK M+LVEEE YEI LDNQGC GGPKAGRL ALANEPK
Sbjct: 526 LKVLRAILNGQWILKMDWIRACMKAMNLVEEELYEIDLDNQGCQGGPKAGRLRALANEPK 585

Query: 598 LFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLTSKDKLEAKRHEFEVTSNLLIVYNLDP 657
           LFSGLKFYFSG+Y SSYK+ LEDLVE GGG VL SKD+LE  R      +NLL VYNLDP
Sbjct: 586 LFSGLKFYFSGEYDSSYKKYLEDLVEGGGGVVLKSKDELEVGR-----DANLLAVYNLDP 640

Query: 658 PQGSKLGDEVSTLWQRLNEAEDLAANTGSQVIGHTWILESIAACKLQPFI 707
           P+G +L DEVS LW RL EAE+L ANT     GHTWILESIAACKLQPF+
Sbjct: 641 PEGCELEDEVSILWHRLTEAENLTANTA----GHTWILESIAACKLQPFV 686


>Medtr2g018880.1 | breast cancer susceptibility-like protein, putative
            | HC | chr2:6018865-6024557 | 20130731
          Length = 1006

 Score =  360 bits (923), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 183/384 (47%), Positives = 241/384 (62%), Gaps = 7/384 (1%)

Query: 327  CSFCQSSETSEATGPMLHYANGKSVIGDAAMQPNVIHVHRCCVDWAPQVYFVDETCKNLK 386
            C+FC SSE SEA+GPM+HY + K V  D    P VIH HR C +WAP VYF D+   NL+
Sbjct: 620  CAFCLSSEESEASGPMVHYFDEKPVTADFEGGPKVIHCHRNCTEWAPNVYFEDDNAINLE 679

Query: 387  AEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHVPCAMDVSTCRWDQEKYLLLCPVHSNA 446
            AE++R  ++KC  CGLKGAALGC+ KSC+R++HVPCA     CRWD E +++LCP+H+ +
Sbjct: 680  AEISRSRRIKCGFCGLKGAALGCFEKSCRRSFHVPCAKWTPECRWDMENFVMLCPLHAPS 739

Query: 447  KFPHEKSRPKKQATQEHPASAHLSSQLSNPLGA---FHDDGKKVVFCGSALSDEEKVLLI 503
              P E S  +  + +       + S+  +        H   KK+V C SALS +EK ++ 
Sbjct: 740  LLPCESSGSQHNSKKHTAKKVKICSRKHDTTSQSQIAHGSHKKIVLCCSALSVQEKEVVS 799

Query: 504  NFASKVGATVTKFWTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKIDWIKACMKVM 563
             F      TV K W S VTHVIA+TD NGAC RTLKVL+ IL G+W+L I+WIKACMK  
Sbjct: 800  EFERVSKVTVLKTWDSGVTHVIASTDENGACRRTLKVLLGILEGKWILSIEWIKACMKET 859

Query: 564  SLVEEEPYEISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVE 623
              V+EE YE+++D  G   GP+ GRL  +  +PKLF G KFYF GD++ SYK  L+DLV 
Sbjct: 860  RPVDEERYEVNVDIHGIKDGPRLGRLRVVNKQPKLFDGYKFYFMGDFIPSYKGYLQDLVI 919

Query: 624  VGGGAVLTSKDKLEAKRHEFEVTSN---LLIVYNLDPPQGSKLGDEVSTLWQRLNEAEDL 680
              GG VL  K  + A ++E   T N    LI+Y+L+ P  S   ++ +   QR  +AE L
Sbjct: 920  AAGGIVLHRK-PVSADQNEILPTMNQHRTLIIYSLELPAKSNPLEKDAIFSQRRCDAEAL 978

Query: 681  AANTGSQVIGHTWILESIAACKLQ 704
            A  T S+V  +TWIL SIA CKLQ
Sbjct: 979  ARPTCSKVASNTWILNSIAGCKLQ 1002



 Score = 83.2 bits (204), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 51/78 (65%)

Query: 18 MLHFQKLALELKCPLCLSLFEKPVLLPCDHLFCDSCLVDSSLSGSECAVCKTKYAQTDIR 77
          M   +K+  ELKCP+CL L    V L C+HLFC+SC+  S  S S C VCK  + + ++R
Sbjct: 1  MGDLEKMGRELKCPICLGLLHSAVSLTCNHLFCNSCIFKSMKSASSCPVCKIPFTRREVR 60

Query: 78 NVPFVENMVAIYRSLDAS 95
            P ++N+V IY++++A+
Sbjct: 61 PAPHIDNLVTIYKNMEAA 78


>Medtr2g078630.1 | P-loop nucleoside triphosphate hydrolase
           superfamily protein, putative | HC |
           chr2:32829577-32820356 | 20130731
          Length = 1828

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 37/83 (44%), Positives = 52/83 (62%), Gaps = 2/83 (2%)

Query: 362 IHVHRCCVDWAPQVYFVDETC-KNLKAEVARGAKLKCSTCGLKGAALGCYVKSCKRTYHV 420
           I VH+ C  W+P+VYF    C KN++A + RG  LKC+ CG +GA +GC V  C +TYH+
Sbjct: 425 IWVHQNCAVWSPEVYFAGLGCLKNVRAALCRGRALKCTRCGRRGATIGCRVDRCPKTYHL 484

Query: 421 PCAMDVSTCRWDQEKYLLLCPVH 443
            CA   + C +D  K+L+ C  H
Sbjct: 485 ACAR-ANGCIFDHRKFLIACTDH 506


>Medtr1g087290.2 | DNA replication regulator dpb11, putative | HC |
            chr1:39126643-39118680 | 20130731
          Length = 1243

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 9/121 (7%)

Query: 517  WTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYE---- 572
            W+   TH IA         RT K   A  +GRW+LK D++ A  +   L+ EEPYE    
Sbjct: 953  WSYQATHFIAPD----PLRRTEKFFAATASGRWILKTDFLSASSQAGKLLPEEPYEWHKN 1008

Query: 573  -ISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLT 631
             +S D       P+  RL         F G++    GD  +   + L+  V+ G G +L 
Sbjct: 1009 GLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCFAPPLDTLKRAVKAGDGTILA 1068

Query: 632  S 632
            +
Sbjct: 1069 T 1069


>Medtr1g087290.1 | DNA replication regulator dpb11, putative | HC |
            chr1:39126643-39118885 | 20130731
          Length = 1346

 Score = 55.1 bits (131), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 9/121 (7%)

Query: 517  WTSDVTHVIAATDANGACSRTLKVLMAILNGRWVLKIDWIKACMKVMSLVEEEPYE---- 572
            W+   TH IA         RT K   A  +GRW+LK D++ A  +   L+ EEPYE    
Sbjct: 953  WSYQATHFIAPD----PLRRTEKFFAATASGRWILKTDFLSASSQAGKLLPEEPYEWHKN 1008

Query: 573  -ISLDNQGCNGGPKAGRLSALANEPKLFSGLKFYFSGDYVSSYKEDLEDLVEVGGGAVLT 631
             +S D       P+  RL         F G++    GD  +   + L+  V+ G G +L 
Sbjct: 1009 GLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCFAPPLDTLKRAVKAGDGTILA 1068

Query: 632  S 632
            +
Sbjct: 1069 T 1069