Miyakogusa Predicted Gene

Lj0g3v0294299.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0294299.1 Non Characterized Hit- tr|A5BST0|A5BST0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,47.24,2e-18,DUF4137,Putative sodium bile acid cotransporter; GB
DEF: HYPOTHETICAL PROTEIN F18O21_120,NULL; FAMIL,CUFF.19705.1
         (115 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g050462.1 | Na+-bile acid cotransporter | HC | chr1:194385...   154   2e-38
Medtr1g050462.2 | Na+-bile acid cotransporter | HC | chr1:194385...   131   1e-31

>Medtr1g050462.1 | Na+-bile acid cotransporter | HC |
           chr1:19438571-19428186 | 20130731
          Length = 414

 Score =  154 bits (390), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 84/115 (73%), Positives = 90/115 (78%)

Query: 1   MVKPRVFLVAIXXXXXXXXXXXVFNSIAVWSLSIISGGRNSVFSRRENANALILVASQKT 60
           +VKP+VFLVAI           VFNSIAV SLSIISGG  S FSR ENANALILVASQKT
Sbjct: 300 IVKPKVFLVAIGLGALLHLTLLVFNSIAVRSLSIISGGGKSTFSREENANALILVASQKT 359

Query: 61  LPVMVAVIETLHGAFGESGLLVLPCIAAHLNQVIVDSFLVNFLRPRVDSNKVKVA 115
           LPVMVAVIE L GAFGESGLLVLPCIA HL Q+IVDSFLVNF+R + +   VKVA
Sbjct: 360 LPVMVAVIEPLCGAFGESGLLVLPCIATHLIQIIVDSFLVNFMRRKDNPGNVKVA 414


>Medtr1g050462.2 | Na+-bile acid cotransporter | HC |
           chr1:19438571-19428220 | 20130731
          Length = 407

 Score =  131 bits (330), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 77/102 (75%)

Query: 1   MVKPRVFLVAIXXXXXXXXXXXVFNSIAVWSLSIISGGRNSVFSRRENANALILVASQKT 60
           +VKP+VFLVAI           VFNSIAV SLSIISGG  S FSR ENANALILVASQKT
Sbjct: 300 IVKPKVFLVAIGLGALLHLTLLVFNSIAVRSLSIISGGGKSTFSREENANALILVASQKT 359

Query: 61  LPVMVAVIETLHGAFGESGLLVLPCIAAHLNQVIVDSFLVNF 102
           LPVMVAVIE L GAFGESGLLVLPCIA HL QVI     V+F
Sbjct: 360 LPVMVAVIEPLCGAFGESGLLVLPCIATHLIQVIDLYLTVSF 401