Miyakogusa Predicted Gene

Lj0g3v0293709.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0293709.1 tr|B8HWS8|B8HWS8_CYAP4 Chloride channel core
OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141)
GN=Cya,34.91,2e-17,Clc chloride channel,Chloride channel, core;
Voltage_CLC,Chloride channel, voltage gated; no descrip,CUFF.19661.1
         (358 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g009530.1 | ClC chloride channel family protein | HC | chr...   441   e-124
Medtr3g009530.2 | ClC chloride channel family protein | HC | chr...   266   3e-71
Medtr5g099290.5 | ClC chloride channel family protein | HC | chr...   113   3e-25
Medtr5g099290.4 | ClC chloride channel family protein | HC | chr...   113   3e-25
Medtr5g099290.1 | ClC chloride channel family protein | HC | chr...   113   3e-25
Medtr5g099290.6 | ClC chloride channel family protein | HC | chr...   112   5e-25
Medtr5g099290.3 | ClC chloride channel family protein | HC | chr...    87   2e-17
Medtr5g099290.2 | ClC chloride channel family protein | HC | chr...    87   2e-17

>Medtr3g009530.1 | ClC chloride channel family protein | HC |
           chr3:2088332-2079303 | 20130731
          Length = 757

 Score =  441 bits (1134), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/333 (69%), Positives = 243/333 (72%), Gaps = 4/333 (1%)

Query: 1   MPENDQHRLLGSSEDAELDDLESAHGSEAVVVTANXXXXXXXXXXXXFRDLLRLSGHHRH 60
           MPENDQ RLLG+SEDAE  D+E AHGSE +    N             RD+L+LSGHHRH
Sbjct: 1   MPENDQLRLLGASEDAE-RDIE-AHGSEHIA-GVNGGGGGGSGSGKGLRDMLKLSGHHRH 57

Query: 61  SFKX-XXXXXXXXXXXXXXXXXXXXXXXXFDLRSGDPSADVLADSAPPEWAXXXXXXXXX 119
           SFK                          FDL S D S DVLADSAPPEWA         
Sbjct: 58  SFKRFERERERERDRVVDSNNVRDSSHSEFDLHSFDSSGDVLADSAPPEWALLLLGCLLG 117

Query: 120 XXXXXFVAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMC 179
                 VA FNKGVHVIHEW WAGTPNEGAAWLRLQRL DTWHRILLIPVTGGV+VGMMC
Sbjct: 118 LATGLLVAVFNKGVHVIHEWVWAGTPNEGAAWLRLQRLGDTWHRILLIPVTGGVMVGMMC 177

Query: 180 GLLEILDQIKQSSHSSQRQGFDLLAGIIPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCA 239
           GLLEILDQIKQ+S+S QRQGFDLLAGI PT+KAIQAAVTLGTGCSLGPEGPSVDIGKSCA
Sbjct: 178 GLLEILDQIKQASYSPQRQGFDLLAGIYPTVKAIQAAVTLGTGCSLGPEGPSVDIGKSCA 237

Query: 240 NGFSLMMENNRERRIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLRAENSPPFTTAM 299
           NGFSLMMENNRER+I                  VAGCFFAIETVLRPLRAENSPPFTTAM
Sbjct: 238 NGFSLMMENNRERKIALVAAGAAAGISSGFNAAVAGCFFAIETVLRPLRAENSPPFTTAM 297

Query: 300 IILASVISSTVSNVIQGTQSAFTVPEYQLKSAA 332
           IILASVISSTVSNV+QG+QSAFTVPEY+LKSAA
Sbjct: 298 IILASVISSTVSNVLQGSQSAFTVPEYELKSAA 330


>Medtr3g009530.2 | ClC chloride channel family protein | HC |
           chr3:2088332-2079303 | 20130731
          Length = 586

 Score =  266 bits (680), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 131/159 (82%), Positives = 139/159 (87%)

Query: 174 IVGMMCGLLEILDQIKQSSHSSQRQGFDLLAGIIPTIKAIQAAVTLGTGCSLGPEGPSVD 233
           +VGMMCGLLEILDQIKQ+S+S QRQGFDLLAGI PT+KAIQAAVTLGTGCSLGPEGPSVD
Sbjct: 1   MVGMMCGLLEILDQIKQASYSPQRQGFDLLAGIYPTVKAIQAAVTLGTGCSLGPEGPSVD 60

Query: 234 IGKSCANGFSLMMENNRERRIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLRAENSP 293
           IGKSCANGFSLMMENNRER+I                  VAGCFFAIETVLRPLRAENSP
Sbjct: 61  IGKSCANGFSLMMENNRERKIALVAAGAAAGISSGFNAAVAGCFFAIETVLRPLRAENSP 120

Query: 294 PFTTAMIILASVISSTVSNVIQGTQSAFTVPEYQLKSAA 332
           PFTTAMIILASVISSTVSNV+QG+QSAFTVPEY+LKSAA
Sbjct: 121 PFTTAMIILASVISSTVSNVLQGSQSAFTVPEYELKSAA 159


>Medtr5g099290.5 | ClC chloride channel family protein | HC |
           chr5:43532620-43537497 | 20130731
          Length = 721

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 21/210 (10%)

Query: 126 VAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMCGLLEIL 185
           V  FN  VH I +  W G P+ GA+WLR   + +TW  ++L+P  GG++V ++  L    
Sbjct: 101 VVLFNNVVHEIRDLLWDGIPDRGASWLREAPIQETWKSVILVPAFGGLLVSLLNLLSNSN 160

Query: 186 DQIKQSSHSSQRQGFDLLAGIIPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLM 245
              +                  P +KAI A++TLGTG SLGPEGPSVDIG S A   +  
Sbjct: 161 SNSR------------------PFLKAIAASITLGTGNSLGPEGPSVDIGNSIARWIAST 202

Query: 246 MENNRERRIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLRAENSPPF---TTAMIIL 302
                 + +                  VAGCFFA+E+VL P  +++S      TT+ +IL
Sbjct: 203 PLFTSAKLLPLRAAGSAAGLSAGFNAAVAGCFFAVESVLWPSDSDSSNLSLTNTTSTVIL 262

Query: 303 ASVISSTVSNVIQGTQSAFTVPEYQLKSAA 332
           ++VI+S +S +  G++ AF VP+Y  +S A
Sbjct: 263 SAVIASVISEIGLGSEPAFQVPDYDFRSPA 292


>Medtr5g099290.4 | ClC chloride channel family protein | HC |
           chr5:43532620-43538498 | 20130731
          Length = 643

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 21/210 (10%)

Query: 126 VAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMCGLLEIL 185
           V  FN  VH I +  W G P+ GA+WLR   + +TW  ++L+P  GG++V ++  L    
Sbjct: 101 VVLFNNVVHEIRDLLWDGIPDRGASWLREAPIQETWKSVILVPAFGGLLVSLLNLLSNSN 160

Query: 186 DQIKQSSHSSQRQGFDLLAGIIPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLM 245
              +                  P +KAI A++TLGTG SLGPEGPSVDIG S A   +  
Sbjct: 161 SNSR------------------PFLKAIAASITLGTGNSLGPEGPSVDIGNSIARWIAST 202

Query: 246 MENNRERRIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLRAENSPPF---TTAMIIL 302
                 + +                  VAGCFFA+E+VL P  +++S      TT+ +IL
Sbjct: 203 PLFTSAKLLPLRAAGSAAGLSAGFNAAVAGCFFAVESVLWPSDSDSSNLSLTNTTSTVIL 262

Query: 303 ASVISSTVSNVIQGTQSAFTVPEYQLKSAA 332
           ++VI+S +S +  G++ AF VP+Y  +S A
Sbjct: 263 SAVIASVISEIGLGSEPAFQVPDYDFRSPA 292


>Medtr5g099290.1 | ClC chloride channel family protein | HC |
           chr5:43532558-43538623 | 20130731
          Length = 712

 Score =  113 bits (282), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 21/210 (10%)

Query: 126 VAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMCGLLEIL 185
           V  FN  VH I +  W G P+ GA+WLR   + +TW  ++L+P  GG++V ++  L    
Sbjct: 101 VVLFNNVVHEIRDLLWDGIPDRGASWLREAPIQETWKSVILVPAFGGLLVSLLNLLSNSN 160

Query: 186 DQIKQSSHSSQRQGFDLLAGIIPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLM 245
              +                  P +KAI A++TLGTG SLGPEGPSVDIG S A   +  
Sbjct: 161 SNSR------------------PFLKAIAASITLGTGNSLGPEGPSVDIGNSIARWIAST 202

Query: 246 MENNRERRIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLRAENSPPF---TTAMIIL 302
                 + +                  VAGCFFA+E+VL P  +++S      TT+ +IL
Sbjct: 203 PLFTSAKLLPLRAAGSAAGLSAGFNAAVAGCFFAVESVLWPSDSDSSNLSLTNTTSTVIL 262

Query: 303 ASVISSTVSNVIQGTQSAFTVPEYQLKSAA 332
           ++VI+S +S +  G++ AF VP+Y  +S A
Sbjct: 263 SAVIASVISEIGLGSEPAFQVPDYDFRSPA 292


>Medtr5g099290.6 | ClC chloride channel family protein | HC |
           chr5:43532558-43535027 | 20130731
          Length = 475

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 109/210 (51%), Gaps = 21/210 (10%)

Query: 126 VAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMCGLLEIL 185
           V  FN  VH I +  W G P+ GA+WLR   + +TW  ++L+P  GG++V ++  L    
Sbjct: 101 VVLFNNVVHEIRDLLWDGIPDRGASWLREAPIQETWKSVILVPAFGGLLVSLLNLLSNSN 160

Query: 186 DQIKQSSHSSQRQGFDLLAGIIPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLM 245
              +                  P +KAI A++TLGTG SLGPEGPSVDIG S A   +  
Sbjct: 161 SNSR------------------PFLKAIAASITLGTGNSLGPEGPSVDIGNSIARWIAST 202

Query: 246 MENNRERRIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLRAENSPPF---TTAMIIL 302
                 + +                  VAGCFFA+E+VL P  +++S      TT+ +IL
Sbjct: 203 PLFTSAKLLPLRAAGSAAGLSAGFNAAVAGCFFAVESVLWPSDSDSSNLSLTNTTSTVIL 262

Query: 303 ASVISSTVSNVIQGTQSAFTVPEYQLKSAA 332
           ++VI+S +S +  G++ AF VP+Y  +S A
Sbjct: 263 SAVIASVISEIGLGSEPAFQVPDYDFRSPA 292


>Medtr5g099290.3 | ClC chloride channel family protein | HC |
           chr5:43532620-43536786 | 20130731
          Length = 615

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 97/213 (45%), Gaps = 55/213 (25%)

Query: 126 VAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMCGLLEIL 185
           V  FN  VH I +  W G P+ GA+WLR   + +TW  ++L+P  GG++V ++  L    
Sbjct: 101 VVLFNNVVHEIRDLLWDGIPDRGASWLREAPIQETWKSVILVPAFGGLLVSLLNLLSNSN 160

Query: 186 DQIKQSSHSSQRQGFDLLAGIIPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLM 245
              +                  P +KAI A++TLGTG SLGPEGPSVDIG S A      
Sbjct: 161 SNSR------------------PFLKAIAASITLGTGNSLGPEGPSVDIGNSIAR----- 197

Query: 246 MENNRERRIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLR-----AENSPPFTTAM- 299
                                      +A         L PLR     A  S  F  A+ 
Sbjct: 198 --------------------------WIASTPLFTSAKLLPLRAAGSAAGLSAGFNAAVA 231

Query: 300 IILASVISSTVSNVIQGTQSAFTVPEYQLKSAA 332
           +IL++VI+S +S +  G++ AF VP+Y  +S A
Sbjct: 232 VILSAVIASVISEIGLGSEPAFQVPDYDFRSPA 264


>Medtr5g099290.2 | ClC chloride channel family protein | HC |
           chr5:43532620-43538623 | 20130731
          Length = 684

 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 69/213 (32%), Positives = 97/213 (45%), Gaps = 55/213 (25%)

Query: 126 VAAFNKGVHVIHEWAWAGTPNEGAAWLRLQRLADTWHRILLIPVTGGVIVGMMCGLLEIL 185
           V  FN  VH I +  W G P+ GA+WLR   + +TW  ++L+P  GG++V ++  L    
Sbjct: 101 VVLFNNVVHEIRDLLWDGIPDRGASWLREAPIQETWKSVILVPAFGGLLVSLLNLLSNSN 160

Query: 186 DQIKQSSHSSQRQGFDLLAGIIPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLM 245
              +                  P +KAI A++TLGTG SLGPEGPSVDIG S A      
Sbjct: 161 SNSR------------------PFLKAIAASITLGTGNSLGPEGPSVDIGNSIAR----- 197

Query: 246 MENNRERRIXXXXXXXXXXXXXXXXXXVAGCFFAIETVLRPLR-----AENSPPFTTAM- 299
                                      +A         L PLR     A  S  F  A+ 
Sbjct: 198 --------------------------WIASTPLFTSAKLLPLRAAGSAAGLSAGFNAAVA 231

Query: 300 IILASVISSTVSNVIQGTQSAFTVPEYQLKSAA 332
           +IL++VI+S +S +  G++ AF VP+Y  +S A
Sbjct: 232 VILSAVIASVISEIGLGSEPAFQVPDYDFRSPA 264