Miyakogusa Predicted Gene

Lj0g3v0293169.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0293169.1 Non Characterized Hit- tr|F6GSR0|F6GSR0_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,69.84,2e-18,seg,NULL,CUFF.19621.1
         (535 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g077860.1 | ataxia telangiectasia mutated protein, putativ...   937   0.0  

>Medtr3g077860.1 | ataxia telangiectasia mutated protein, putative |
           HC | chr3:34986185-35052991 | 20130731
          Length = 3033

 Score =  937 bits (2423), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/535 (84%), Positives = 494/535 (92%)

Query: 1   MATVTSRDVQEILDKLSSDKAKPREEGIKLLNTWLEGERSYNFCEFIGLNTAKLRANEVP 60
           MA V+SRDV+EI++KLSSDK K REEGIKLLN+WLEGERSYNFC+FIGL+T+KLR +EVP
Sbjct: 1   MAKVSSRDVREIVEKLSSDKVKAREEGIKLLNSWLEGERSYNFCQFIGLSTSKLRPDEVP 60

Query: 61  HSETWPFLISLLIQCVSSEISSSKRRNPKMTYAKTLRVVVQRAEDAKYSGKMLPLSSVVK 120
           HSETWPFL+SLLIQ  SSEISSSKRRNPKM YAKTLR++VQRAE+AKYSG++LPLSSVVK
Sbjct: 61  HSETWPFLVSLLIQSASSEISSSKRRNPKMIYAKTLRLIVQRAEEAKYSGQILPLSSVVK 120

Query: 121 PLFNHVWDVLSNVPSFQSEYGIILRHLLAVKDYSLQMRKRIYCSLVILYMEKVEASLNGK 180
           PLFNHV DVLSNVPSFQSEYGIILRHLLAV+DYS QMRKRIYCSLV++Y+EKVEASLNGK
Sbjct: 121 PLFNHVSDVLSNVPSFQSEYGIILRHLLAVRDYSFQMRKRIYCSLVLMYIEKVEASLNGK 180

Query: 181 NISHCTSKEEVFRFILTLHSLLDYPPGDYPDNLREDIVQGFVRICSFIREDGKISRKLIE 240
           NISHCTSKEEVFR ILTLHSLLDYPPGDYP NLREDI +GFVRICSFIRE+GK+SRKL+E
Sbjct: 181 NISHCTSKEEVFRNILTLHSLLDYPPGDYPVNLREDIAKGFVRICSFIREEGKVSRKLVE 240

Query: 241 CINTYLLNDGPNLGFQLLEIHNAIEQFLFRCWLTTHDRVLKDSLMFYARIQLNLVRGAGD 300
           CINTYLLNDGPNLG QLLEIH AI+QFLF CWLTTHDRVLKDSLMFYAR QLNL RGA D
Sbjct: 241 CINTYLLNDGPNLGCQLLEIHKAIQQFLFHCWLTTHDRVLKDSLMFYARTQLNLTRGAAD 300

Query: 301 KCLLVEQLLDVIYKDLDQGSMSSTSITRGDGQKDDKLGVLSSSQCGLVELAAVLFFKACL 360
           +CLLVEQLLDVIYKDLDQGSMSSTS+ RGDG KDDKLG LSSSQCGLVELAAVLF++ACL
Sbjct: 301 RCLLVEQLLDVIYKDLDQGSMSSTSMPRGDGNKDDKLGTLSSSQCGLVELAAVLFYRACL 360

Query: 361 NTTKASLSEKRVKREPAAMVLREALMKGKWLWIAAFCYLIRNYYSRIGKDLCLYWFEGIC 420
           NTT+AS SEKRVKREPAA+VLREALMKGKWLW AAFCYL RN++SR+ KDL LYWFEGIC
Sbjct: 361 NTTRASPSEKRVKREPAAVVLREALMKGKWLWNAAFCYLTRNFHSRMCKDLFLYWFEGIC 420

Query: 421 MSFDRVLNTANVDRAYDGLLWTLRSLQELSSVLLLPNSMMEISSMPSSTLNEFINGWQLL 480
           MSFDR+LN+ANVDRAYDGLLWTLRSLQELSS LLLPNSM++ISSMP STLNE INGW++L
Sbjct: 421 MSFDRILNSANVDRAYDGLLWTLRSLQELSSALLLPNSMIKISSMPPSTLNEVINGWKVL 480

Query: 481 WSTIVHGLPIFSNITXXXXXXXXXXXNITSNELVNTCLIPQDVWDLQFFKRPTSM 535
           WSTIVHGLPIFSNI            NITSN+LV+TCLIPQDVWDLQFFKRPTS+
Sbjct: 481 WSTIVHGLPIFSNIAILVDAALTLLSNITSNDLVDTCLIPQDVWDLQFFKRPTSI 535