Miyakogusa Predicted Gene

Lj0g3v0293039.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0293039.1 Non Characterized Hit- tr|B9S8T2|B9S8T2_RICCO Ran
GTPase binding protein, putative OS=Ricinus
commun,46.49,2e-19,REGULATOR OF CHROMOSOME CONDENSATION (RCC1),NULL;
REGULATOR OF CHROMOSOME CONDENSATION,NULL; BRX,Bre,CUFF.19603.1
         (124 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g089900.1 | regulator of chromosome condensation (RCC1) fa...    92   1e-19
Medtr8g019620.2 | brevis radix-like protein | HC | chr8:6946947-...    77   4e-15
Medtr8g019620.1 | brevis radix-like protein | HC | chr8:6946947-...    77   4e-15
Medtr2g041170.1 | brevis radix-like protein | HC | chr2:18039563...    77   4e-15
Medtr6g034795.1 | chromosome condensation regulator RCC1 repeat ...    77   4e-15
Medtr8g071220.1 | brevis radix-like protein | HC | chr8:30217921...    75   1e-14
Medtr3g064560.1 | regulator of chromosome condensation (RCC1) fa...    70   5e-13
Medtr5g026970.1 | brevis RADIX-like protein | HC | chr5:11177365...    66   1e-11
Medtr5g026970.2 | brevis RADIX-like protein | HC | chr5:11177292...    65   1e-11
Medtr7g072410.1 | regulator of chromosome condensation (RCC1) fa...    57   4e-09
Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat ...    55   2e-08
Medtr4g029410.1 | regulator of chromosome condensation (RCC1) fa...    47   3e-06

>Medtr5g089900.1 | regulator of chromosome condensation (RCC1) family
            protein | HC | chr5:39105074-39114126 | 20130731
          Length = 1117

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 27/148 (18%)

Query: 1    MAERLPKGHDTDSSTNSYAET-TNRIVDQSLDE-----------------SYISNTITPV 42
            MAERLP G      + S A   +N +   ++D                    +SN  + V
Sbjct: 953  MAERLPVGTAKSVKSPSIASFGSNELSFAAIDRLNIQATSPEADLTGSNTQLLSNGSSTV 1012

Query: 43   SEGSSNEEKPILA-----NGSRTQSGKA----EWVVQDEPGVYISLSSIPGGGNELKRVR 93
            S  S+ + K   +     NGSRT+  ++    EWV QDEPGVYI+L+S+PGG  +LKRVR
Sbjct: 1013 SNRSTGQNKQSQSDSTNRNGSRTKDSESRSETEWVEQDEPGVYITLTSLPGGVIDLKRVR 1072

Query: 94   FSRRHYTEEQAEKWWAENGTKVLERHNI 121
            FSR+ ++E+QAE WWAEN  +V E++N+
Sbjct: 1073 FSRKRFSEKQAENWWAENRVRVYEQYNV 1100


>Medtr8g019620.2 | brevis radix-like protein | HC |
           chr8:6946947-6951587 | 20130731
          Length = 369

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 66  EWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNI 121
           EWV Q EPGV I+  S+P GGN+LKR+RFSR  + + QA++WWAEN  KV+E +N+
Sbjct: 138 EWVAQVEPGVLITFVSLPEGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNV 193



 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 39/54 (72%)

Query: 66  EWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERH 119
           EWV QDEPGVYI++ ++PGG  EL+RVRFSR  + E  A  WW EN  ++ E++
Sbjct: 315 EWVEQDEPGVYITIRALPGGTRELRRVRFSREKFGEMHARLWWEENRARIQEQY 368


>Medtr8g019620.1 | brevis radix-like protein | HC |
           chr8:6946947-6951530 | 20130731
          Length = 369

 Score = 77.0 bits (188), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 43/56 (76%)

Query: 66  EWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNI 121
           EWV Q EPGV I+  S+P GGN+LKR+RFSR  + + QA++WWAEN  KV+E +N+
Sbjct: 138 EWVAQVEPGVLITFVSLPEGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNV 193



 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 29/54 (53%), Positives = 39/54 (72%)

Query: 66  EWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERH 119
           EWV QDEPGVYI++ ++PGG  EL+RVRFSR  + E  A  WW EN  ++ E++
Sbjct: 315 EWVEQDEPGVYITIRALPGGTRELRRVRFSREKFGEMHARLWWEENRARIQEQY 368


>Medtr2g041170.1 | brevis radix-like protein | HC |
           chr2:18039563-18048357 | 20130731
          Length = 352

 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 33/59 (55%), Positives = 44/59 (74%)

Query: 66  EWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNIVAL 124
           EWV Q EPGV I+  S+P GGN+LKR+RFSR  + + QA++WWAEN  KV+E +N+  L
Sbjct: 118 EWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDIFNKWQAQRWWAENYDKVMELYNVQRL 176



 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 37/51 (72%)

Query: 65  AEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKV 115
           +EWV +DEPGVYI++ S+PGG  E++RVRFSR  + E  A  WW EN  +V
Sbjct: 297 SEWVEEDEPGVYITIRSMPGGKREIRRVRFSREKFGEMHARLWWEENRARV 347


>Medtr6g034795.1 | chromosome condensation regulator RCC1 repeat
            protein | HC | chr6:12109737-12119303 | 20130731
          Length = 1118

 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 33/57 (57%), Positives = 43/57 (75%)

Query: 65   AEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNI 121
            AEW+ Q EPGVYI+L ++  G  +LKRVRFSRR + E QAE WW+EN  KV E++N+
Sbjct: 1038 AEWIEQYEPGVYITLVAMHDGTRDLKRVRFSRRRFGENQAENWWSENKDKVYEKYNV 1094


>Medtr8g071220.1 | brevis radix-like protein | HC |
           chr8:30217921-30223478 | 20130731
          Length = 333

 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 43/56 (76%)

Query: 66  EWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNI 121
           EW+ Q EPGV+I+  S+P GGN+LKR+RFSR  + + QA+KWW EN  +++E +N+
Sbjct: 133 EWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQKWWGENYDRIMELYNV 188



 Score = 65.9 bits (159), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 3/83 (3%)

Query: 37  NTITPVSEGSSNEEKPILANGSRTQSGKAEWVVQDEPGVYISLSSIPGGGNELKRVRFSR 96
           +++ P    +S+ ++P ++N S  +S   EWV QDEPGVYI++  +  G  EL+RVRFSR
Sbjct: 253 SSMEPSRATTSSRDEPSISNASEMES---EWVEQDEPGVYITIRQLADGTRELRRVRFSR 309

Query: 97  RHYTEEQAEKWWAENGTKVLERH 119
             + E  A+ WW +N  ++  ++
Sbjct: 310 ERFGEVNAKTWWEDNRERIQAQY 332


>Medtr3g064560.1 | regulator of chromosome condensation (RCC1) family
            protein | HC | chr3:29089374-29095433 | 20130731
          Length = 1032

 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 64   KAEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNI 121
            K EWV Q E GVYI+L+  P G   LKRVRFSR+ +++++AE+WW EN TKV  ++ I
Sbjct: 972  KVEWVEQYENGVYITLTKSPSGEKGLKRVRFSRKRFSQKEAERWWEENQTKVHHKYEI 1029


>Medtr5g026970.1 | brevis RADIX-like protein | HC |
           chr5:11177365-11173027 | 20130731
          Length = 333

 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 46/75 (61%)

Query: 50  EKPILANGSRTQSGKAEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWA 109
           ++P++A          EWV + EPGV ++  S+P GGN+LKR+RF+R  + + QA  WW 
Sbjct: 118 QEPVVAEPEAVVEENREWVAEVEPGVDVTFLSLPDGGNDLKRIRFNREIFDKWQARVWWG 177

Query: 110 ENGTKVLERHNIVAL 124
           EN  ++ E +N+ + 
Sbjct: 178 ENFDRLRELYNVRSF 192



 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 12/120 (10%)

Query: 9   HDTDSSTNSYAETTNRIVDQSLDESYISNTITPVSEGSSNEEKPILA---------NGSR 59
           H+T S +N  A   N   D  +   Y + +   + EGSS+ +    A         + S 
Sbjct: 215 HETGSGSNVAAWENN---DPMVGNQYFNPSGFTMGEGSSSNQNMHAALRSSSMNEISFSN 271

Query: 60  TQSGKAEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERH 119
           +    +EW+ Q EPG+++++   P G NEL+R++FSR+ + + +A KWW EN  ++ E++
Sbjct: 272 SSDPDSEWIEQVEPGIFVTVRQYPDGNNELRRIKFSRQRFGDAEARKWWDENRDRLREQY 331


>Medtr5g026970.2 | brevis RADIX-like protein | HC |
           chr5:11177292-11173029 | 20130731
          Length = 255

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 46/75 (61%)

Query: 50  EKPILANGSRTQSGKAEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWA 109
           ++P++A          EWV + EPGV ++  S+P GGN+LKR+RF+R  + + QA  WW 
Sbjct: 40  QEPVVAEPEAVVEENREWVAEVEPGVDVTFLSLPDGGNDLKRIRFNREIFDKWQARVWWG 99

Query: 110 ENGTKVLERHNIVAL 124
           EN  ++ E +N+ + 
Sbjct: 100 ENFDRLRELYNVRSF 114



 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 12/120 (10%)

Query: 9   HDTDSSTNSYAETTNRIVDQSLDESYISNTITPVSEGSSNEEKPILA---------NGSR 59
           H+T S +N  A   N   D  +   Y + +   + EGSS+ +    A         + S 
Sbjct: 137 HETGSGSNVAAWENN---DPMVGNQYFNPSGFTMGEGSSSNQNMHAALRSSSMNEISFSN 193

Query: 60  TQSGKAEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERH 119
           +    +EW+ Q EPG+++++   P G NEL+R++FSR+ + + +A KWW EN  ++ E++
Sbjct: 194 SSDPDSEWIEQVEPGIFVTVRQYPDGNNELRRIKFSRQRFGDAEARKWWDENRDRLREQY 253


>Medtr7g072410.1 | regulator of chromosome condensation (RCC1) family
            protein | HC | chr7:26894031-26888474 | 20130731
          Length = 1108

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 45/85 (52%)

Query: 36   SNTITPVSEGSSNEEKPILANGSRTQSGKAEWVVQDEPGVYISLSSIPGGGNELKRVRFS 95
            SNT   V+  SS  +   L      + G  + V Q EPGVY++L   P G    K V+FS
Sbjct: 966  SNTEARVASQSSENDSRTLNPSRSVREGNTQVVDQFEPGVYVTLIVRPDGKRLFKSVKFS 1025

Query: 96   RRHYTEEQAEKWWAENGTKVLERHN 120
            +R + E QAE+WW  N  +V  R++
Sbjct: 1026 KRKFREHQAEEWWTLNKDRVHARYS 1050


>Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat
            protein | HC | chr1:44778263-44766991 | 20130731
          Length = 1121

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 11/119 (9%)

Query: 3    ERLPKGHDTDSSTNSYAETTNRIVDQSLDESYISNTITPVSEGSSNEEKPILANGSRTQS 62
            +RLP       ++ S  + TN  V  + D    S        GS +    + AN ++ + 
Sbjct: 992  DRLP-------NSGSMIQATNSSVSDTFDGRN-SGNFRDDESGSRSRNDVLAANSNQVE- 1042

Query: 63   GKAEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNI 121
              AEW+ Q EPGVYI+L ++  G  +L+RVRFSRR + E QAE WW+EN  +V ER+N+
Sbjct: 1043 --AEWIEQYEPGVYITLVAMRDGTRDLRRVRFSRRRFGENQAETWWSENRDRVYERYNV 1099


>Medtr4g029410.1 | regulator of chromosome condensation (RCC1) family
            protein, putative | HC | chr4:10165501-10157053 |
            20130731
          Length = 1045

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 32/51 (62%)

Query: 72   EPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNIV 122
            + GVY  L+    G    KRV+FS+R +T+ QAE+WW +N  +VL ++  V
Sbjct: 972  QSGVYALLTLRADGIKIFKRVKFSKRRFTDTQAEEWWRQNKGRVLRKYCPV 1022