Miyakogusa Predicted Gene
- Lj0g3v0293039.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0293039.1 Non Characterized Hit- tr|B9S8T2|B9S8T2_RICCO Ran
GTPase binding protein, putative OS=Ricinus
commun,46.49,2e-19,REGULATOR OF CHROMOSOME CONDENSATION (RCC1),NULL;
REGULATOR OF CHROMOSOME CONDENSATION,NULL; BRX,Bre,CUFF.19603.1
(124 letters)
Database: Medicago_aa4.0v1
62,319 sequences; 21,947,249 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Medtr5g089900.1 | regulator of chromosome condensation (RCC1) fa... 92 1e-19
Medtr8g019620.2 | brevis radix-like protein | HC | chr8:6946947-... 77 4e-15
Medtr8g019620.1 | brevis radix-like protein | HC | chr8:6946947-... 77 4e-15
Medtr2g041170.1 | brevis radix-like protein | HC | chr2:18039563... 77 4e-15
Medtr6g034795.1 | chromosome condensation regulator RCC1 repeat ... 77 4e-15
Medtr8g071220.1 | brevis radix-like protein | HC | chr8:30217921... 75 1e-14
Medtr3g064560.1 | regulator of chromosome condensation (RCC1) fa... 70 5e-13
Medtr5g026970.1 | brevis RADIX-like protein | HC | chr5:11177365... 66 1e-11
Medtr5g026970.2 | brevis RADIX-like protein | HC | chr5:11177292... 65 1e-11
Medtr7g072410.1 | regulator of chromosome condensation (RCC1) fa... 57 4e-09
Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat ... 55 2e-08
Medtr4g029410.1 | regulator of chromosome condensation (RCC1) fa... 47 3e-06
>Medtr5g089900.1 | regulator of chromosome condensation (RCC1) family
protein | HC | chr5:39105074-39114126 | 20130731
Length = 1117
Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 83/148 (56%), Gaps = 27/148 (18%)
Query: 1 MAERLPKGHDTDSSTNSYAET-TNRIVDQSLDE-----------------SYISNTITPV 42
MAERLP G + S A +N + ++D +SN + V
Sbjct: 953 MAERLPVGTAKSVKSPSIASFGSNELSFAAIDRLNIQATSPEADLTGSNTQLLSNGSSTV 1012
Query: 43 SEGSSNEEKPILA-----NGSRTQSGKA----EWVVQDEPGVYISLSSIPGGGNELKRVR 93
S S+ + K + NGSRT+ ++ EWV QDEPGVYI+L+S+PGG +LKRVR
Sbjct: 1013 SNRSTGQNKQSQSDSTNRNGSRTKDSESRSETEWVEQDEPGVYITLTSLPGGVIDLKRVR 1072
Query: 94 FSRRHYTEEQAEKWWAENGTKVLERHNI 121
FSR+ ++E+QAE WWAEN +V E++N+
Sbjct: 1073 FSRKRFSEKQAENWWAENRVRVYEQYNV 1100
>Medtr8g019620.2 | brevis radix-like protein | HC |
chr8:6946947-6951587 | 20130731
Length = 369
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 66 EWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNI 121
EWV Q EPGV I+ S+P GGN+LKR+RFSR + + QA++WWAEN KV+E +N+
Sbjct: 138 EWVAQVEPGVLITFVSLPEGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNV 193
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 66 EWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERH 119
EWV QDEPGVYI++ ++PGG EL+RVRFSR + E A WW EN ++ E++
Sbjct: 315 EWVEQDEPGVYITIRALPGGTRELRRVRFSREKFGEMHARLWWEENRARIQEQY 368
>Medtr8g019620.1 | brevis radix-like protein | HC |
chr8:6946947-6951530 | 20130731
Length = 369
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 43/56 (76%)
Query: 66 EWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNI 121
EWV Q EPGV I+ S+P GGN+LKR+RFSR + + QA++WWAEN KV+E +N+
Sbjct: 138 EWVAQVEPGVLITFVSLPEGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNV 193
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 66 EWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERH 119
EWV QDEPGVYI++ ++PGG EL+RVRFSR + E A WW EN ++ E++
Sbjct: 315 EWVEQDEPGVYITIRALPGGTRELRRVRFSREKFGEMHARLWWEENRARIQEQY 368
>Medtr2g041170.1 | brevis radix-like protein | HC |
chr2:18039563-18048357 | 20130731
Length = 352
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%)
Query: 66 EWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNIVAL 124
EWV Q EPGV I+ S+P GGN+LKR+RFSR + + QA++WWAEN KV+E +N+ L
Sbjct: 118 EWVAQVEPGVLITFVSLPRGGNDLKRIRFSRDIFNKWQAQRWWAENYDKVMELYNVQRL 176
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%)
Query: 65 AEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKV 115
+EWV +DEPGVYI++ S+PGG E++RVRFSR + E A WW EN +V
Sbjct: 297 SEWVEEDEPGVYITIRSMPGGKREIRRVRFSREKFGEMHARLWWEENRARV 347
>Medtr6g034795.1 | chromosome condensation regulator RCC1 repeat
protein | HC | chr6:12109737-12119303 | 20130731
Length = 1118
Score = 76.6 bits (187), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 43/57 (75%)
Query: 65 AEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNI 121
AEW+ Q EPGVYI+L ++ G +LKRVRFSRR + E QAE WW+EN KV E++N+
Sbjct: 1038 AEWIEQYEPGVYITLVAMHDGTRDLKRVRFSRRRFGENQAENWWSENKDKVYEKYNV 1094
>Medtr8g071220.1 | brevis radix-like protein | HC |
chr8:30217921-30223478 | 20130731
Length = 333
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 29/56 (51%), Positives = 43/56 (76%)
Query: 66 EWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNI 121
EW+ Q EPGV+I+ S+P GGN+LKR+RFSR + + QA+KWW EN +++E +N+
Sbjct: 133 EWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQKWWGENYDRIMELYNV 188
Score = 65.9 bits (159), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 52/83 (62%), Gaps = 3/83 (3%)
Query: 37 NTITPVSEGSSNEEKPILANGSRTQSGKAEWVVQDEPGVYISLSSIPGGGNELKRVRFSR 96
+++ P +S+ ++P ++N S +S EWV QDEPGVYI++ + G EL+RVRFSR
Sbjct: 253 SSMEPSRATTSSRDEPSISNASEMES---EWVEQDEPGVYITIRQLADGTRELRRVRFSR 309
Query: 97 RHYTEEQAEKWWAENGTKVLERH 119
+ E A+ WW +N ++ ++
Sbjct: 310 ERFGEVNAKTWWEDNRERIQAQY 332
>Medtr3g064560.1 | regulator of chromosome condensation (RCC1) family
protein | HC | chr3:29089374-29095433 | 20130731
Length = 1032
Score = 69.7 bits (169), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 42/58 (72%)
Query: 64 KAEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNI 121
K EWV Q E GVYI+L+ P G LKRVRFSR+ +++++AE+WW EN TKV ++ I
Sbjct: 972 KVEWVEQYENGVYITLTKSPSGEKGLKRVRFSRKRFSQKEAERWWEENQTKVHHKYEI 1029
>Medtr5g026970.1 | brevis RADIX-like protein | HC |
chr5:11177365-11173027 | 20130731
Length = 333
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 50 EKPILANGSRTQSGKAEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWA 109
++P++A EWV + EPGV ++ S+P GGN+LKR+RF+R + + QA WW
Sbjct: 118 QEPVVAEPEAVVEENREWVAEVEPGVDVTFLSLPDGGNDLKRIRFNREIFDKWQARVWWG 177
Query: 110 ENGTKVLERHNIVAL 124
EN ++ E +N+ +
Sbjct: 178 ENFDRLRELYNVRSF 192
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 12/120 (10%)
Query: 9 HDTDSSTNSYAETTNRIVDQSLDESYISNTITPVSEGSSNEEKPILA---------NGSR 59
H+T S +N A N D + Y + + + EGSS+ + A + S
Sbjct: 215 HETGSGSNVAAWENN---DPMVGNQYFNPSGFTMGEGSSSNQNMHAALRSSSMNEISFSN 271
Query: 60 TQSGKAEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERH 119
+ +EW+ Q EPG+++++ P G NEL+R++FSR+ + + +A KWW EN ++ E++
Sbjct: 272 SSDPDSEWIEQVEPGIFVTVRQYPDGNNELRRIKFSRQRFGDAEARKWWDENRDRLREQY 331
>Medtr5g026970.2 | brevis RADIX-like protein | HC |
chr5:11177292-11173029 | 20130731
Length = 255
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 46/75 (61%)
Query: 50 EKPILANGSRTQSGKAEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWA 109
++P++A EWV + EPGV ++ S+P GGN+LKR+RF+R + + QA WW
Sbjct: 40 QEPVVAEPEAVVEENREWVAEVEPGVDVTFLSLPDGGNDLKRIRFNREIFDKWQARVWWG 99
Query: 110 ENGTKVLERHNIVAL 124
EN ++ E +N+ +
Sbjct: 100 ENFDRLRELYNVRSF 114
Score = 63.2 bits (152), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 64/120 (53%), Gaps = 12/120 (10%)
Query: 9 HDTDSSTNSYAETTNRIVDQSLDESYISNTITPVSEGSSNEEKPILA---------NGSR 59
H+T S +N A N D + Y + + + EGSS+ + A + S
Sbjct: 137 HETGSGSNVAAWENN---DPMVGNQYFNPSGFTMGEGSSSNQNMHAALRSSSMNEISFSN 193
Query: 60 TQSGKAEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERH 119
+ +EW+ Q EPG+++++ P G NEL+R++FSR+ + + +A KWW EN ++ E++
Sbjct: 194 SSDPDSEWIEQVEPGIFVTVRQYPDGNNELRRIKFSRQRFGDAEARKWWDENRDRLREQY 253
>Medtr7g072410.1 | regulator of chromosome condensation (RCC1) family
protein | HC | chr7:26894031-26888474 | 20130731
Length = 1108
Score = 57.0 bits (136), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%)
Query: 36 SNTITPVSEGSSNEEKPILANGSRTQSGKAEWVVQDEPGVYISLSSIPGGGNELKRVRFS 95
SNT V+ SS + L + G + V Q EPGVY++L P G K V+FS
Sbjct: 966 SNTEARVASQSSENDSRTLNPSRSVREGNTQVVDQFEPGVYVTLIVRPDGKRLFKSVKFS 1025
Query: 96 RRHYTEEQAEKWWAENGTKVLERHN 120
+R + E QAE+WW N +V R++
Sbjct: 1026 KRKFREHQAEEWWTLNKDRVHARYS 1050
>Medtr1g099220.1 | chromosome condensation regulator RCC1 repeat
protein | HC | chr1:44778263-44766991 | 20130731
Length = 1121
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 11/119 (9%)
Query: 3 ERLPKGHDTDSSTNSYAETTNRIVDQSLDESYISNTITPVSEGSSNEEKPILANGSRTQS 62
+RLP ++ S + TN V + D S GS + + AN ++ +
Sbjct: 992 DRLP-------NSGSMIQATNSSVSDTFDGRN-SGNFRDDESGSRSRNDVLAANSNQVE- 1042
Query: 63 GKAEWVVQDEPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNI 121
AEW+ Q EPGVYI+L ++ G +L+RVRFSRR + E QAE WW+EN +V ER+N+
Sbjct: 1043 --AEWIEQYEPGVYITLVAMRDGTRDLRRVRFSRRRFGENQAETWWSENRDRVYERYNV 1099
>Medtr4g029410.1 | regulator of chromosome condensation (RCC1) family
protein, putative | HC | chr4:10165501-10157053 |
20130731
Length = 1045
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 72 EPGVYISLSSIPGGGNELKRVRFSRRHYTEEQAEKWWAENGTKVLERHNIV 122
+ GVY L+ G KRV+FS+R +T+ QAE+WW +N +VL ++ V
Sbjct: 972 QSGVYALLTLRADGIKIFKRVKFSKRRFTDTQAEEWWRQNKGRVLRKYCPV 1022