Miyakogusa Predicted Gene

Lj0g3v0292979.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0292979.1 Non Characterized Hit- tr|J7S6C9|J7S6C9_KAZNA
Uncharacterized protein OS=Kazachstania naganishii
(st,55.17,2e-19,Ribosomal_S4,Ribosomal protein S4/S9, N-terminal; U3
SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3,,CUFF.19596.1
         (89 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g102530.3 | U3 small nucleolar ribonucleoprotein IMP3 | HC...   168   9e-43
Medtr8g102530.1 | U3 small nucleolar ribonucleoprotein IMP3 | HC...   168   9e-43
Medtr8g102530.2 | U3 small nucleolar ribonucleoprotein IMP3 | HC...   153   3e-38

>Medtr8g102530.3 | U3 small nucleolar ribonucleoprotein IMP3 | HC
          | chr8:43168335-43171146 | 20130731
          Length = 182

 Score =  168 bits (426), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 79/89 (88%), Positives = 84/89 (94%)

Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHRENLVMQRYHVTGRDDYKKYSSLCGMVQKLVNIL 60
          MRKLK HEQ+LL+KVNFLEWKREGGHREN+VMQRYHVTGRDDYKKYSS+C MVQKLVN +
Sbjct: 1  MRKLKHHEQRLLRKVNFLEWKREGGHRENMVMQRYHVTGRDDYKKYSSICRMVQKLVNTV 60

Query: 61 KQMDPKDPVRVDMTDKLLEKLYNMGVIPT 89
          KQMDPKDP RVDMTDKLLEKLYNMGVI T
Sbjct: 61 KQMDPKDPFRVDMTDKLLEKLYNMGVIST 89


>Medtr8g102530.1 | U3 small nucleolar ribonucleoprotein IMP3 | HC
          | chr8:43168335-43171146 | 20130731
          Length = 182

 Score =  168 bits (426), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 79/89 (88%), Positives = 84/89 (94%)

Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHRENLVMQRYHVTGRDDYKKYSSLCGMVQKLVNIL 60
          MRKLK HEQ+LL+KVNFLEWKREGGHREN+VMQRYHVTGRDDYKKYSS+C MVQKLVN +
Sbjct: 1  MRKLKHHEQRLLRKVNFLEWKREGGHRENMVMQRYHVTGRDDYKKYSSICRMVQKLVNTV 60

Query: 61 KQMDPKDPVRVDMTDKLLEKLYNMGVIPT 89
          KQMDPKDP RVDMTDKLLEKLYNMGVI T
Sbjct: 61 KQMDPKDPFRVDMTDKLLEKLYNMGVIST 89


>Medtr8g102530.2 | U3 small nucleolar ribonucleoprotein IMP3 | HC
          | chr8:43168339-43171123 | 20130731
          Length = 173

 Score =  153 bits (387), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 72/86 (83%), Positives = 80/86 (93%)

Query: 1  MRKLKFHEQKLLKKVNFLEWKREGGHRENLVMQRYHVTGRDDYKKYSSLCGMVQKLVNIL 60
          MRKLK HEQ+LL+KVNFLEWKREGGHREN+VMQRYHVTGRDDYKKYSS+C MVQKLVN +
Sbjct: 1  MRKLKHHEQRLLRKVNFLEWKREGGHRENMVMQRYHVTGRDDYKKYSSICRMVQKLVNTV 60

Query: 61 KQMDPKDPVRVDMTDKLLEKLYNMGV 86
          KQMDPKDP RVDMTDKLLEKL ++ +
Sbjct: 61 KQMDPKDPFRVDMTDKLLEKLQSITL 86