Miyakogusa Predicted Gene

Lj0g3v0292949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0292949.1 tr|G7JTY5|G7JTY5_MEDTR Squalene epoxidase
OS=Medicago truncatula GN=MTR_4g092640 PE=4
SV=1,69.05,0.00000000000007,no description,NULL;
seg,NULL,NODE_51951_length_404_cov_44.841583.path2.1
         (83 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g092640.1 | squalene monooxygenase | HC | chr4:36749132-36...    75   2e-14
Medtr6g034955.1 | squalene monooxygenase | HC | chr6:12253385-12...    52   1e-07
Medtr6g035065.1 | squalene epoxidase | HC | chr6:12399939-124116...    47   3e-06

>Medtr4g092640.1 | squalene monooxygenase | HC |
          chr4:36749132-36744844 | 20130731
          Length = 525

 Score = 74.7 bits (182), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 51/84 (60%), Gaps = 5/84 (5%)

Query: 1  MDYQYLLGGILACYACSLAFLFVLYSFAAKRNATSSSLLHLKSNGCAKT-SENGICQQKG 59
          MDYQY+LGGILAC   SLAF+FV+Y F  K+   SSS + +KSNG AKT SENGIC Q+ 
Sbjct: 1  MDYQYILGGILAC---SLAFVFVVYGFGEKKKTGSSS-MDVKSNGYAKTSSENGICSQEI 56

Query: 60 EGSXXXXXXXXXXXXXXXXYTLGK 83
           G                 YTLGK
Sbjct: 57 VGETDIIIVGAGVAGAALAYTLGK 80


>Medtr6g034955.1 | squalene monooxygenase | HC |
          chr6:12253385-12243348 | 20130731
          Length = 527

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 1  MDYQYLLGGILACYACSLAFLFVLYSFAAKRNATS--SSLLHLKSNGCAKTSENGICQ-- 56
          MDYQY+LGG +   ACSLAF+F LY    K+ A    SS  +LK+NG     +NG C   
Sbjct: 1  MDYQYILGGEI--LACSLAFVFALYIVVEKKKAKEIDSSSTYLKTNG----PKNGTCSSL 54

Query: 57 -QKGEGSXXXXXXXXXXXXXXXXYTLGK 83
           Q+  G                 YTLGK
Sbjct: 55 FQQAAGGTDIIIVGAGVAGSALAYTLGK 82


>Medtr6g035065.1 | squalene epoxidase | HC |
          chr6:12399939-12411656 | 20130731
          Length = 528

 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 1  MDYQYLLGGILACYACSLAFLFVLYSFAAKRNA--TSSSLLHLKSNGCAKTSENGICQ-- 56
          M+YQY+LGG     ACS AF++VLY+   K+     +SS  +LK+NG     +NGIC   
Sbjct: 1  MNYQYILGG--EFLACSFAFVYVLYTLVEKKKPKEIASSSTYLKTNG----PKNGICSSL 54

Query: 57 -QKGEGSXXXXXXXXXXXXXXXXYTLGK 83
           Q+  G                 YTLGK
Sbjct: 55 LQEAAGGTDIIIVGAGVAGSALAYTLGK 82