Miyakogusa Predicted Gene

Lj0g3v0292149.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0292149.1 Non Characterized Hit- tr|K3Z0N2|K3Z0N2_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,44.53,1e-17,seg,NULL,CUFF.19525.1
         (182 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g017580.1 | BEST plant protein match is: (TAIR:plant.1) pr...   179   9e-46
Medtr4g086340.1 | BEST plant protein match is: (TAIR:plant.1) pr...    94   8e-20

>Medtr5g017580.1 | BEST plant protein match is: (TAIR:plant.1)
           protein, putative | HC | chr5:6424270-6425510 | 20130731
          Length = 165

 Score =  179 bits (455), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 109/180 (60%), Positives = 126/180 (70%), Gaps = 22/180 (12%)

Query: 1   MACLDM-YNNSEHKGXXXXXXXXXXPVSPRISFGNDFVDAKQASKQERSFRSDASVPV-S 58
           MA LDM YN+SE KG          P+SPRISF NDFVD +QA KQ+   RSD  +PV S
Sbjct: 1   MASLDMMYNSSEQKGHHHCA-----PMSPRISFSNDFVDLQQAMKQQER-RSDTHIPVVS 54

Query: 59  SDFEFSVSNYNMMSADELFSKGRLLPFKDGGCNNQVQRP-TTTLREELMVDDDE---FSL 114
           SDFEFSV+NY+MMSADELFSKGRLLP+KD    N++QR  TTTL++EL+ +DDE   FSL
Sbjct: 55  SDFEFSVTNYSMMSADELFSKGRLLPYKD----NKIQRATTTTLKQELLHNDDEYDSFSL 110

Query: 115 RPPKGSSSTRWKGFLGLRKSHIGSKKVDKSEGSSNRGVQAARSGLSNMTSQDLLIEGGSS 174
           RPPKG    RWKG LGLRKSHIGSKK +KSE S  R  +       N TSQ+L  EG SS
Sbjct: 111 RPPKG----RWKGLLGLRKSHIGSKKAEKSEASDQR--RPNEPPQFNFTSQELANEGSSS 164


>Medtr4g086340.1 | BEST plant protein match is: (TAIR:plant.1)
           protein, putative | HC | chr4:33824413-33824944 |
           20130731
          Length = 135

 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 60/144 (41%), Positives = 84/144 (58%), Gaps = 16/144 (11%)

Query: 28  PRISFGNDFVDAKQASKQERSFRSDASVPVSSDFEFSVSNYNMMSADELFSKGRLLPFKD 87
           PRISF NDFV ++QA K E  +R     PVSSDFEFSV NY+M+SAD+ F KG LLP   
Sbjct: 3   PRISFSNDFVVSQQAIKHENIYRE---APVSSDFEFSVKNYSMISADQAFFKGMLLPLSS 59

Query: 88  GGCNNQVQRPTTTLREELMVDDDEFSLRPPKGSSSTRWKGFLGLRKSHIGSKKVDK---S 144
            G          T+R+EL+ DDD  S + PK  S +RWK  LGL++S    K  +K    
Sbjct: 60  EGSKK------VTIRDELLNDDD--SPKWPK--SLSRWKERLGLKRSSASKKDKEKQKMQ 109

Query: 145 EGSSNRGVQAARSGLSNMTSQDLL 168
           + ++N+ V +   G + +  + ++
Sbjct: 110 KSAANQTVPSFGQGETTVNKESMI 133