Miyakogusa Predicted Gene

Lj0g3v0292029.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0292029.2 Non Characterized Hit- tr|C0PB35|C0PB35_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,65.15,8e-17,TRANSCRIPTION ELONGATION FACTOR-RELATED,NULL;
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 3,NULL; ,CUFF.19515.2
         (194 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g095380.1 | transcription elongation factor (TFIIS) family...   211   3e-55
Medtr3g095380.2 | transcription elongation factor (TFIIS) family...   162   2e-40
Medtr7g089140.3 | transcription elongation factor (TFIIS) family...    61   7e-10
Medtr7g089140.2 | transcription elongation factor (TFIIS) family...    61   7e-10
Medtr7g089140.9 | transcription elongation factor (TFIIS) family...    61   8e-10
Medtr7g089140.1 | transcription elongation factor (TFIIS) family...    61   8e-10
Medtr7g089140.4 | transcription elongation factor (TFIIS) family...    61   8e-10
Medtr7g089140.7 | transcription elongation factor (TFIIS) family...    60   1e-09
Medtr7g089140.8 | transcription elongation factor (TFIIS) family...    60   1e-09
Medtr7g089140.6 | transcription elongation factor (TFIIS) family...    60   1e-09
Medtr7g089140.5 | transcription elongation factor (TFIIS) family...    60   1e-09

>Medtr3g095380.1 | transcription elongation factor (TFIIS) family
           protein | HC | chr3:43576349-43579439 | 20130731
          Length = 357

 Score =  211 bits (537), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 114/199 (57%), Positives = 139/199 (69%), Gaps = 8/199 (4%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
           +D+TFQ L+ETDIGR+VN+LRKH S++VRRLVKLLV+KWKE+VD+WVK + P    +T +
Sbjct: 153 IDITFQELKETDIGRNVNQLRKHPSSDVRRLVKLLVKKWKEIVDDWVK-QNPQRGKST-L 210

Query: 61  MGDEDSPQQKTPQNGY-HQIPDFSCSPNPHNGSFGLEGNNSVXX-----XXXXXXXXXXX 114
           M D DSP QKT  NG+ HQIPDF+ SPNPHNGS G + N S                   
Sbjct: 211 MADGDSPLQKTTPNGHNHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKPKSVPRKDPPPK 270

Query: 115 XXXXXXXXXXXXXXQNRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLH 174
                         QNRQREQ+++N +AERLA+ARKRLQ NYKEA NAKKQRTIQVMD+H
Sbjct: 271 PRPSPPVTAPTSAPQNRQREQKESNFDAERLAAARKRLQANYKEADNAKKQRTIQVMDIH 330

Query: 175 ELPKPKNKNTFFAKNKGGA 193
           ELPK K K+ +FAK+KGG 
Sbjct: 331 ELPKSKAKSGYFAKHKGGG 349


>Medtr3g095380.2 | transcription elongation factor (TFIIS) family
           protein | HC | chr3:43576359-43579439 | 20130731
          Length = 318

 Score =  162 bits (410), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 111/168 (66%), Gaps = 8/168 (4%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
           +D+TFQ L+ETDIGR+VN+LRKH S++VRRLVKLLV+KWKE+VD+WVK + P    +T +
Sbjct: 153 IDITFQELKETDIGRNVNQLRKHPSSDVRRLVKLLVKKWKEIVDDWVK-QNPQRGKST-L 210

Query: 61  MGDEDSPQQKTPQNGY-HQIPDFSCSPNPHNGSFGLEGNNS-----VXXXXXXXXXXXXX 114
           M D DSP QKT  NG+ HQIPDF+ SPNPHNGS G + N S                   
Sbjct: 211 MADGDSPLQKTTPNGHNHQIPDFAYSPNPHNGSSGSDRNTSEAEPKPKPKSVPRKDPPPK 270

Query: 115 XXXXXXXXXXXXXXQNRQREQRDNNLEAERLASARKRLQENYKEAANA 162
                         QNRQREQ+++N +AERLA+ARKRLQ NYKEA N 
Sbjct: 271 PRPSPPVTAPTSAPQNRQREQKESNFDAERLAAARKRLQANYKEADNG 318


>Medtr7g089140.3 | transcription elongation factor (TFIIS) family
           protein | HC | chr7:34862782-34858668 | 20130731
          Length = 444

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
           M +    L+ T+IG+ VN LRKH S ++R+L + L+  WKELV+ WVK  T    AA+  
Sbjct: 161 MQLCVDLLKSTEIGKAVNHLRKHGSKDIRQLARTLIDGWKELVNAWVKATTTTPVAAS-- 218

Query: 61  MGDEDSPQQKTP 72
             +E +P  + P
Sbjct: 219 --EEGTPDSRNP 228



 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 44/59 (74%), Gaps = 2/59 (3%)

Query: 130 NRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKN--KNTFF 186
           N Q+++   + +  +L + ++RLQE+Y++A NAK+QRTIQVM++++LPK  +  +NT F
Sbjct: 372 NAQQDKSKCSDDLAKLEATKRRLQESYQQAENAKRQRTIQVMEINDLPKQGSVQRNTHF 430


>Medtr7g089140.2 | transcription elongation factor (TFIIS) family
           protein | HC | chr7:34862782-34858668 | 20130731
          Length = 444

 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
           M +    L+ T+IG+ VN LRKH S ++R+L + L+  WKELV+ WVK  T    AA+  
Sbjct: 161 MQLCVDLLKSTEIGKAVNHLRKHGSKDIRQLARTLIDGWKELVNAWVKATTTTPVAAS-- 218

Query: 61  MGDEDSPQQKTP 72
             +E +P  + P
Sbjct: 219 --EEGTPDSRNP 228



 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 44/59 (74%), Gaps = 2/59 (3%)

Query: 130 NRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKN--KNTFF 186
           N Q+++   + +  +L + ++RLQE+Y++A NAK+QRTIQVM++++LPK  +  +NT F
Sbjct: 372 NAQQDKSKCSDDLAKLEATKRRLQESYQQAENAKRQRTIQVMEINDLPKQGSVQRNTHF 430


>Medtr7g089140.9 | transcription elongation factor (TFIIS) family
           protein | HC | chr7:34862524-34858706 | 20130731
          Length = 447

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
           M +    L+ T+IG+ VN LRKH S ++R+L + L+  WKELV+ WVK  T    AA+  
Sbjct: 164 MQLCVDLLKSTEIGKAVNHLRKHGSKDIRQLARTLIDGWKELVNAWVKATTTTPVAAS-- 221

Query: 61  MGDEDSPQQKTP 72
             +E +P  + P
Sbjct: 222 --EEGTPDSRNP 231



 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 44/59 (74%), Gaps = 2/59 (3%)

Query: 130 NRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKN--KNTFF 186
           N Q+++   + +  +L + ++RLQE+Y++A NAK+QRTIQVM++++LPK  +  +NT F
Sbjct: 375 NAQQDKSKCSDDLAKLEATKRRLQESYQQAENAKRQRTIQVMEINDLPKQGSVQRNTHF 433


>Medtr7g089140.1 | transcription elongation factor (TFIIS) family
           protein | HC | chr7:34862782-34858668 | 20130731
          Length = 447

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
           M +    L+ T+IG+ VN LRKH S ++R+L + L+  WKELV+ WVK  T    AA+  
Sbjct: 164 MQLCVDLLKSTEIGKAVNHLRKHGSKDIRQLARTLIDGWKELVNAWVKATTTTPVAAS-- 221

Query: 61  MGDEDSPQQKTP 72
             +E +P  + P
Sbjct: 222 --EEGTPDSRNP 231



 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 44/59 (74%), Gaps = 2/59 (3%)

Query: 130 NRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKN--KNTFF 186
           N Q+++   + +  +L + ++RLQE+Y++A NAK+QRTIQVM++++LPK  +  +NT F
Sbjct: 375 NAQQDKSKCSDDLAKLEATKRRLQESYQQAENAKRQRTIQVMEINDLPKQGSVQRNTHF 433


>Medtr7g089140.4 | transcription elongation factor (TFIIS) family
           protein | HC | chr7:34862782-34858668 | 20130731
          Length = 447

 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
           M +    L+ T+IG+ VN LRKH S ++R+L + L+  WKELV+ WVK  T    AA+  
Sbjct: 164 MQLCVDLLKSTEIGKAVNHLRKHGSKDIRQLARTLIDGWKELVNAWVKATTTTPVAAS-- 221

Query: 61  MGDEDSPQQKTP 72
             +E +P  + P
Sbjct: 222 --EEGTPDSRNP 231



 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 44/59 (74%), Gaps = 2/59 (3%)

Query: 130 NRQREQRDNNLEAERLASARKRLQENYKEAANAKKQRTIQVMDLHELPKPKN--KNTFF 186
           N Q+++   + +  +L + ++RLQE+Y++A NAK+QRTIQVM++++LPK  +  +NT F
Sbjct: 375 NAQQDKSKCSDDLAKLEATKRRLQESYQQAENAKRQRTIQVMEINDLPKQGSVQRNTHF 433


>Medtr7g089140.7 | transcription elongation factor (TFIIS) family
           protein | HC | chr7:34862782-34858668 | 20130731
          Length = 322

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
           M +    L+ T+IG+ VN LRKH S ++R+L + L+  WKELV+ WVK  T    AA+  
Sbjct: 161 MQLCVDLLKSTEIGKAVNHLRKHGSKDIRQLARTLIDGWKELVNAWVKATTTTPVAAS-- 218

Query: 61  MGDEDSPQQKTP 72
             +E +P  + P
Sbjct: 219 --EEGTPDSRNP 228


>Medtr7g089140.8 | transcription elongation factor (TFIIS) family
           protein | HC | chr7:34862782-34858668 | 20130731
          Length = 322

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
           M +    L+ T+IG+ VN LRKH S ++R+L + L+  WKELV+ WVK  T    AA+  
Sbjct: 161 MQLCVDLLKSTEIGKAVNHLRKHGSKDIRQLARTLIDGWKELVNAWVKATTTTPVAAS-- 218

Query: 61  MGDEDSPQQKTP 72
             +E +P  + P
Sbjct: 219 --EEGTPDSRNP 228


>Medtr7g089140.6 | transcription elongation factor (TFIIS) family
           protein | HC | chr7:34862782-34858668 | 20130731
          Length = 325

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
           M +    L+ T+IG+ VN LRKH S ++R+L + L+  WKELV+ WVK  T    AA+  
Sbjct: 164 MQLCVDLLKSTEIGKAVNHLRKHGSKDIRQLARTLIDGWKELVNAWVKATTTTPVAAS-- 221

Query: 61  MGDEDSPQQKTP 72
             +E +P  + P
Sbjct: 222 --EEGTPDSRNP 231


>Medtr7g089140.5 | transcription elongation factor (TFIIS) family
           protein | HC | chr7:34862782-34858668 | 20130731
          Length = 325

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 4/72 (5%)

Query: 1   MDVTFQALEETDIGRHVNRLRKHSSNEVRRLVKLLVRKWKELVDEWVKFKTPGEAAATSV 60
           M +    L+ T+IG+ VN LRKH S ++R+L + L+  WKELV+ WVK  T    AA+  
Sbjct: 164 MQLCVDLLKSTEIGKAVNHLRKHGSKDIRQLARTLIDGWKELVNAWVKATTTTPVAAS-- 221

Query: 61  MGDEDSPQQKTP 72
             +E +P  + P
Sbjct: 222 --EEGTPDSRNP 231