Miyakogusa Predicted Gene

Lj0g3v0291859.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0291859.1 Non Characterized Hit- tr|D8RL34|D8RL34_SELML
Putative uncharacterized protein OS=Selaginella
moelle,52.86,0.000000000000006,CBS,Cystathionine beta-synthase, core;
Domain in cystathionine beta-synthase and ot,Cystathionine
be,NODE_13332_length_277_cov_906.707581.path1.1
         (75 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g103550.1 | SNF1-related kinase regulatory subunit gamma 1...   155   7e-39
Medtr5g038570.1 | SNF1-related kinase regulatory subunit gamma 1...    56   7e-09

>Medtr4g103550.1 | SNF1-related kinase regulatory subunit gamma 1 |
           HC | chr4:42801133-42797980 | 20130731
          Length = 432

 Score =  155 bits (393), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 69/75 (92%), Positives = 74/75 (98%)

Query: 1   MSSEFITCKKYCTIKELIQLLDREKIHRVYVVDDDGNLQGLITLRDIISRLVHEPHGYFG 60
           MSSEFITCK+ CT+KELIQLLD+E+IHRVYVVDDDGNL+GLITLRDIISRLVHEPHGYFG
Sbjct: 358 MSSEFITCKRDCTVKELIQLLDKEQIHRVYVVDDDGNLEGLITLRDIISRLVHEPHGYFG 417

Query: 61  DFFDGVLPLPANSRV 75
           DFFDGVLPLPANSRV
Sbjct: 418 DFFDGVLPLPANSRV 432


>Medtr5g038570.1 | SNF1-related kinase regulatory subunit gamma 1 |
           HC | chr5:16949833-16952411 | 20130731
          Length = 449

 Score = 56.2 bits (134), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 37/58 (63%)

Query: 6   ITCKKYCTIKELIQLLDREKIHRVYVVDDDGNLQGLITLRDIISRLVHEPHGYFGDFF 63
           ITCK   T++ +I  L  + IHR+Y V+    + G+ITLRD+IS  + EP  +F D++
Sbjct: 382 ITCKPDATLQSVIHTLASQSIHRIYTVNGQDQVVGVITLRDVISCFITEPDYHFDDYY 439