Miyakogusa Predicted Gene

Lj0g3v0291009.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0291009.1 Non Characterized Hit- tr|I1KAS9|I1KAS9_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,91.36,0,ATPases
associated with a variety of cellula,AAA+ ATPase domain; ATP-DEPENDENT
CLP PROTEASE ATP-BIND,CUFF.19456.1
         (317 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit ...   505   e-143
Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit ...   469   e-132
Medtr4g134610.1 | AAA domain, Cdc48 subfamily protein | HC | chr...   158   7e-39
Medtr7g088850.1 | cell division control-like protein | HC | chr7...    49   8e-06

>Medtr3g091550.1 | ATP-dependent Clp protease regulatory subunit
           ClpX | HC | chr3:41648807-41642783 | 20130731
          Length = 581

 Score =  505 bits (1300), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 265/299 (88%), Positives = 278/299 (92%), Gaps = 4/299 (1%)

Query: 4   CWGGSNLGGNFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRVFHETSLKSKWPAGD 63
           CWGGSN+GG FPTPKEICKGLDK VIGQERAKKVLSVAVYNHYKR++HE      W AGD
Sbjct: 153 CWGGSNMGGTFPTPKEICKGLDKHVIGQERAKKVLSVAVYNHYKRIYHE----KLWHAGD 208

Query: 64  SSDNGNRAEAIDDDDRVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQA 123
           S+ +G     +DDDD VELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQA
Sbjct: 209 SNIDGKADVVVDDDDDVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQA 268

Query: 124 GYVGEDVESILYKLLLAADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQHAL 183
           GYVGEDVESILYKLL AADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQ AL
Sbjct: 269 GYVGEDVESILYKLLAAADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQAL 328

Query: 184 LKMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKTISDRRQDSSIGFGA 243
           LKMLEGT+VNVPEKGARKHPRGDNIQIDTKNILFICGGAF+DLEKTIS+RRQDSSIGFGA
Sbjct: 329 LKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGA 388

Query: 244 PVRAKMRTGGVTDSAIASSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLIQV 302
           PVRAKM+ G VT+++IASSLL TVESSDLIAYGLIPEFVGRFPILVSLSALTENQLIQV
Sbjct: 389 PVRAKMKAGSVTEASIASSLLGTVESSDLIAYGLIPEFVGRFPILVSLSALTENQLIQV 447


>Medtr6g059910.1 | ATP-dependent Clp protease regulatory subunit
           ClpX | HC | chr6:20566263-20573202 | 20130731
          Length = 662

 Score =  469 bits (1207), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 252/298 (84%), Positives = 274/298 (91%), Gaps = 6/298 (2%)

Query: 5   WGGSNLGGNFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRVFHETSLKSKWPAGDS 64
           WGGSNLG + P+PKEICKGLDKFVIGQ RAKKVLSVAVYNHYKR++H T      P G  
Sbjct: 237 WGGSNLGKDLPSPKEICKGLDKFVIGQGRAKKVLSVAVYNHYKRIYHAT-----LPKGSG 291

Query: 65  SDNGNRAEAIDDDDRVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAG 124
           +D+G  +  +DDD+ VELEKSN+LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAG
Sbjct: 292 ADSG-ISGILDDDENVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAG 350

Query: 125 YVGEDVESILYKLLLAADYNVAAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQHALL 184
           YVGEDVESILYKLL AADYNVAAAQQGI+YIDEVDKITKKAESLNISRDVSGEGVQ ALL
Sbjct: 351 YVGEDVESILYKLLAAADYNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALL 410

Query: 185 KMLEGTVVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKTISDRRQDSSIGFGAP 244
           KMLEGT+VNVPEKGARK+PRGDNIQIDTKNILFICGGAF+DLEKTIS+RRQDSSIGFGAP
Sbjct: 411 KMLEGTIVNVPEKGARKNPRGDNIQIDTKNILFICGGAFIDLEKTISERRQDSSIGFGAP 470

Query: 245 VRAKMRTGGVTDSAIASSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLIQV 302
           VRA +R+G + DSA+ASSLLE+VESSDLIAYGLIPEF+GRFPILVSLSALTE QL+QV
Sbjct: 471 VRANIRSGRIIDSAVASSLLESVESSDLIAYGLIPEFIGRFPILVSLSALTEEQLMQV 528


>Medtr4g134610.1 | AAA domain, Cdc48 subfamily protein | HC |
           chr4:56399353-56401236 | 20130731
          Length = 225

 Score =  158 bits (399), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 91/110 (82%), Gaps = 3/110 (2%)

Query: 88  LLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLLAADYNVAA 147
           LL+GPT SGKTLL KTLAR VNVPF +AD+TT TQAGYVG+DV SILY LL  AD++V  
Sbjct: 74  LLIGPTDSGKTLLPKTLARIVNVPFTMADSTTFTQAGYVGQDVHSILYNLLQEADFDVEL 133

Query: 148 AQQGIVYIDEVDKITKKAESLNISRDVSGEGVQHALLKMLEGTVVNVPEK 197
           AQ GIVYIDE+DKIT K+ES++  RDVSGEGVQHALLKMLE T   +P+K
Sbjct: 134 AQPGIVYIDEIDKITNKSESISGGRDVSGEGVQHALLKMLEST---IPDK 180


>Medtr7g088850.1 | cell division control-like protein | HC |
           chr7:34685484-34690084 | 20130731
          Length = 559

 Score = 48.5 bits (114), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 87  ILLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLLAADYNVA 146
           ILL GP G  KT LAK +A   NVPF+    T +  + +VG+  E  L ++   A     
Sbjct: 322 ILLHGPPGCSKTTLAKAIANAANVPFISLSCTEMI-SKFVGQG-EGYLREMFRKARL--- 376

Query: 147 AAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQHALLKMLEG 189
            A + I++ DEVD +  K    +    V+ E V   LL  ++G
Sbjct: 377 -AGKSIIFFDEVDAVAGKRGHSSSGNSVAEERVLSTLLTEMDG 418