Miyakogusa Predicted Gene

Lj0g3v0290909.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0290909.1 Non Characterized Hit- tr|I3S268|I3S268_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,100,0,V_ATP_synt_C: V-type ATPase, C subunit,ATPase, V0 complex,
proteolipid subunit C, eukaryotic; no des,CUFF.19441.1
         (164 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr5g021690.1 | vacuolar H+-pumping ATPase 16 kDa proteolipid ...   222   1e-58
Medtr8g076150.1 | vacuolar H+-pumping ATPase 16 kDa proteolipid ...   219   6e-58
Medtr4g072050.1 | vacuolar H+-pumping ATPase 16 kDa proteolipid ...   219   7e-58
Medtr5g021690.2 | vacuolar H+-pumping ATPase 16 kDa proteolipid ...   165   1e-41
Medtr7g090330.1 | vacuolar proton-ATPase subunit C proteolipid p...    55   3e-08
Medtr2g049150.1 | V-type proton ATPase 16 kDa proteolipid subuni...    49   1e-06

>Medtr5g021690.1 | vacuolar H+-pumping ATPase 16 kDa proteolipid
           subunit 4 | HC | chr5:8424558-8421677 | 20130731
          Length = 164

 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 121/164 (73%), Positives = 122/164 (74%)

Query: 1   MAGFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 60
           MAGFSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 1   MAGFSGDETAPFFGFLGAAAALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 60

Query: 61  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGV 120
           AGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIG+VGDAGV
Sbjct: 61  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGVVGDAGV 120

Query: 121 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAE 164
           RANAQQPKLFVGM            YGLIVGIILSSRAGQSRAE
Sbjct: 121 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164


>Medtr8g076150.1 | vacuolar H+-pumping ATPase 16 kDa proteolipid
           subunit 4 | HC | chr8:32246083-32247718 | 20130731
          Length = 164

 Score =  219 bits (559), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 121/164 (73%), Positives = 121/164 (73%)

Query: 1   MAGFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 60
           MA FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 1   MAPFSGDETAPLFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 60

Query: 61  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGV 120
           AGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGV
Sbjct: 61  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 120

Query: 121 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAE 164
           RANAQQPKLFVGM            YGLIVGIILSSRAGQSRAE
Sbjct: 121 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164


>Medtr4g072050.1 | vacuolar H+-pumping ATPase 16 kDa proteolipid
           subunit 4 | HC | chr4:27331106-27328753 | 20130731
          Length = 164

 Score =  219 bits (559), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 121/164 (73%), Positives = 121/164 (73%)

Query: 1   MAGFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 60
           MA FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 1   MAPFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 60

Query: 61  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGV 120
           AGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGV
Sbjct: 61  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGV 120

Query: 121 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAE 164
           RANAQQPKLFVGM            YGLIVGIILSSRAGQSRAE
Sbjct: 121 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164


>Medtr5g021690.2 | vacuolar H+-pumping ATPase 16 kDa proteolipid
           subunit 4 | HC | chr5:8424531-8421677 | 20130731
          Length = 132

 Score =  165 bits (418), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/121 (74%), Positives = 91/121 (75%)

Query: 1   MAGFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 60
           MAGFSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 1   MAGFSGDETAPFFGFLGAAAALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 60

Query: 61  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGV 120
           AGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIG+VGDAGV
Sbjct: 61  AGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGVVGDAGV 120

Query: 121 R 121
           R
Sbjct: 121 R 121


>Medtr7g090330.1 | vacuolar proton-ATPase subunit C proteolipid
           protein | HC | chr7:35528642-35532633 | 20130731
          Length = 182

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 5/139 (3%)

Query: 25  SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGIN--PK 82
           S +GAA+G   +G  +    +  P +  K+++ V+    + IYG+I+A+I+ T +   PK
Sbjct: 38  SVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPK 97

Query: 83  AKSYY---LFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXX 139
           +  Y    L  GY                 + +GI+G +   ++AQ   LFV +      
Sbjct: 98  SSIYEPESLRAGYAIFASGLIVGFANLVCGLCVGIIGSSCALSDAQNSSLFVKILVIEIF 157

Query: 140 XXXXXXYGLIVGIILSSRA 158
                 +G+IVGII+S++A
Sbjct: 158 GSALGLFGVIVGIIMSAQA 176


>Medtr2g049150.1 | V-type proton ATPase 16 kDa proteolipid subunit
          c1 | HC | chr2:21665407-21665662 | 20130731
          Length = 59

 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/64 (48%), Positives = 34/64 (53%), Gaps = 7/64 (10%)

Query: 1  MAGFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 60
          MA F GDETAP             SCMG A GT KSGVG ASMGV+R       +VP  +
Sbjct: 1  MAPFIGDETAPFFGFLGAAATLVFSCMGVACGTTKSGVGAASMGVIR-------VVPTNL 53

Query: 61 AGVL 64
           G L
Sbjct: 54 EGRL 57