Miyakogusa Predicted Gene

Lj0g3v0290499.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0290499.1 Non Characterized Hit- tr|A5BTB8|A5BTB8_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,56.07,2e-19,seg,NULL; CHD5,CHD5-like protein;
coiled-coil,NULL,CUFF.19418.1
         (174 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g073600.1 | CHD5-like protein | HC | chr8:31118483-3112617...   258   1e-69

>Medtr8g073600.1 | CHD5-like protein | HC | chr8:31118483-31126176 |
           20130731
          Length = 173

 Score =  258 bits (660), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 124/175 (70%), Positives = 141/175 (80%), Gaps = 4/175 (2%)

Query: 1   MGDGASEGHQRSLAAPLIFFVVIAFQFASHWIDQFKKSG-DNGKEIQLRGEIKQLLKEAN 59
           MGD   E H+RS AAPLIF +V+AFQFAS+WIDQFK+SG +  KE QLR EIK+LLKEA+
Sbjct: 2   MGD---EEHERSFAAPLIFLIVLAFQFASYWIDQFKQSGSEKEKETQLRAEIKELLKEAS 58

Query: 60  SLSQPSTYXXXXXXXXXXXXXXXXLAKCHNLHDKDTALYSNVLLVSKVLTYLILLIWFWS 119
           SLSQPST+                LAKCHNLHD+DTALYS VL  +KVLT+L LLIWFWS
Sbjct: 59  SLSQPSTFAQAAKLRRQAAAKEKELAKCHNLHDEDTALYSKVLFSTKVLTHLTLLIWFWS 118

Query: 120 APVASISQQLVQPFGRLLSWRTGGVQNNNIMVGIIPWLVVCSRVSRFICRLTYGK 174
            PVASISQQLVQPFGRLLSW+TGG+QNNNIMVGIIPWL + SRVS+FIC+LTYGK
Sbjct: 119 TPVASISQQLVQPFGRLLSWKTGGLQNNNIMVGIIPWLAISSRVSKFICKLTYGK 173