Miyakogusa Predicted Gene

Lj0g3v0290399.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0290399.1 tr|C1JXM3|C1JXM3_LIZAU RAD1-like protein OS=Liza
aurata GN=rad1 PE=2 SV=1,26.97,3e-18,no description,NULL; CELL CYCLE
CHECKPOINT PROTEIN RAD1,Rad1/Rec1/Rad17; Rad1,Rad1/Rec1/Rad17; DNA
c,CUFF.19397.1
         (301 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g447310.1 | damaged DNA-binding; exodeoxyribonuclease IIIs...   550   e-157

>Medtr8g447310.1 | damaged DNA-binding; exodeoxyribonuclease IIIs
           protein | HC | chr8:18592798-18588589 | 20130731
          Length = 296

 Score =  550 bits (1416), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 262/295 (88%), Positives = 280/295 (94%), Gaps = 1/295 (0%)

Query: 7   EEEDEAPDVLCHLENVQGLVDALTAVRWKRHQDAVLELSEHGIVLIVEESGCLQAKVYLK 66
           E ++EAPDVLC LENVQGLVDALTAVRWKRHQDAV+ELSEHGIVLIVEESGCLQAKVYLK
Sbjct: 3   EMDEEAPDVLCELENVQGLVDALTAVRWKRHQDAVIELSEHGIVLIVEESGCLQAKVYLK 62

Query: 67  RELFIRYDYNAQARPRFGVSLGLFVDCLNAFSVHGHSSVIQIQYPGPDMQVLLKSVDSPD 126
           +ELF+RYDYNA+ RPRFGVSLGLFVDCLNAFSV GHS VIQIQYPGPDMQ+LLKSVDS D
Sbjct: 63  KELFVRYDYNAEGRPRFGVSLGLFVDCLNAFSVPGHSGVIQIQYPGPDMQLLLKSVDSLD 122

Query: 127 ASICAEIRTRIPDTVAWDYNFEPAGTNPLTFTVKSAALKEAIEDLEWPGSSIQIILEPDP 186
           ASICAEIRTRIPDTVAWDYNFEPAGTNPLTFTVKSAALKEAIEDLEWPGSSIQI +EPDP
Sbjct: 123 ASICAEIRTRIPDTVAWDYNFEPAGTNPLTFTVKSAALKEAIEDLEWPGSSIQITMEPDP 182

Query: 187 PSVTMRAEGHGDLQIDFMYYVNSDLLAAFQCDNHTSFKYKYKFLRATTSNIPNSVIKENR 246
           PSVT+RAEGHGDLQIDFMY  NS+LL AFQCD+  SFKYKYKFLRA+TSN+P+SVIKENR
Sbjct: 183 PSVTLRAEGHGDLQIDFMYCANSELLIAFQCDHRASFKYKYKFLRASTSNMPSSVIKENR 242

Query: 247 GSKLSIGRGGMLKVQHLVSIAKPSASHTHVDSAGYQQPGRIAHIEFFLKPEESED 301
            SKLSIGRGGMLKVQHLVSI+KP+ SH +VDSAGYQQPGRIAHIEFF+KPEESED
Sbjct: 243 ASKLSIGRGGMLKVQHLVSISKPT-SHPYVDSAGYQQPGRIAHIEFFVKPEESED 296