Miyakogusa Predicted Gene

Lj0g3v0289679.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0289679.4 Non Characterized Hit- tr|C5Y4B4|C5Y4B4_SORBI
Putative uncharacterized protein Sb05g021440
OS=Sorghu,41.58,0.00000000000001,Transpos_assoc,NULL,CUFF.19353.4
         (90 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g036210.1 | TNP2, putative | LC | chr1:13247644-13248117 |...    69   9e-13

>Medtr1g036210.1 | TNP2, putative | LC | chr1:13247644-13248117 |
          20130731
          Length = 140

 Score = 68.9 bits (167), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 17/85 (20%)

Query: 3  DKEWTKLPRFCPEYIMGVRRFLDFVYTKGRPQGDEILCPCAKCRNHCWTKRNVILDHLVA 62
          DKEWTK  R   EY  G   FLD  YTKG+P G EI  PCA                  +
Sbjct: 2  DKEWTKSARESEEYENGPNYFLDHAYTKGKPHGKEIFWPCA-----------------TS 44

Query: 63 NGFLKGYDVWVHHGEQIERPMEVDD 87
           GF KGY+VWV HG +I++  +++D
Sbjct: 45 FGFQKGYNVWVRHGVKIQKLNDIND 69