Miyakogusa Predicted Gene

Lj0g3v0288809.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0288809.1 tr|A9TF63|A9TF63_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_169729,44.76,7e-18,COX16,Cytochrome c oxidase assembly
protein COX16; Q4P1Z3_USTMA_Q4P1Z3;,Cytochrome c oxidase
assembl,NODE_57619_length_747_cov_41.847389.path2.1
         (116 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g094840.1 | cytochrome C oxidase assembly protein COX16 | ...   123   4e-29
Medtr1g094845.1 | transmembrane protein, putative | HC | chr1:42...    48   2e-06

>Medtr1g094840.1 | cytochrome C oxidase assembly protein COX16 | HC
           | chr1:42657311-42657011 | 20130731
          Length = 74

 Score =  123 bits (308), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 59/72 (81%), Positives = 66/72 (91%)

Query: 44  HLLQGSKDIAKVKDDQEWEIIEARKALSRTGPVDAYQPKKISLEDELKVLQQKVDINDYE 103
           HL   SKDI++VKDD+EWEIIEARKALSRTGPV+AY+PKKISL+DELK LQQKVDINDYE
Sbjct: 2   HLCLPSKDISRVKDDKEWEIIEARKALSRTGPVNAYKPKKISLDDELKALQQKVDINDYE 61

Query: 104 YKKIPKPNESHR 115
           +KKIPKPNE  R
Sbjct: 62  FKKIPKPNEDRR 73


>Medtr1g094845.1 | transmembrane protein, putative | HC |
          chr1:42659912-42658654 | 20130731
          Length = 77

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 27/32 (84%), Gaps = 3/32 (9%)

Query: 2  TSTVHQSQNPATSFKRWGRKSPFVRYGLPMIS 33
          +STV ++   A++FKRWGRK PF+RYGLPMIS
Sbjct: 12 SSTVEKT---ASTFKRWGRKGPFLRYGLPMIS 40