Miyakogusa Predicted Gene

Lj0g3v0288769.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0288769.1 Non Characterized Hit- tr|I1PSZ4|I1PSZ4_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4 SV=1,64.77,8e-19,
,CUFF.19366.1
         (151 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr1g097570.1 | late embryogenesis abundant protein, putative ...   181   2e-46

>Medtr1g097570.1 | late embryogenesis abundant protein, putative |
           HC | chr1:44007660-44008470 | 20130731
          Length = 184

 Score =  181 bits (460), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 103/156 (66%), Positives = 117/156 (75%), Gaps = 10/156 (6%)

Query: 1   MNRRANVSLFNSFFRIGHSVRQSPIPTSLIPFTSSTHIIPASNFHSISKF-----AIMHN 55
           MNRRAN+SL  + F++ HS  +SPIP      +      P SNFHS SKF     +I  N
Sbjct: 34  MNRRANLSLSTALFKVTHSFHKSPIPI-----SPIPFPPPTSNFHSFSKFTPTHFSIQQN 88

Query: 56  LRSFCGGSSEVDQNKEVDTINLKFVEAREEIDMALESKETVYFNEEAECARAAVNEVVGM 115
           LR+F  GSS  D NKEVD INLKF EAREEI+MALESKETVYFNEEAECARAAVNEV+  
Sbjct: 89  LRNFSNGSSNFDHNKEVDEINLKFAEAREEIEMALESKETVYFNEEAECARAAVNEVLSK 148

Query: 116 FERLLARLPEKDRAALQRSMGLKIEQLKAELQQLDE 151
           F+ LLA+LPEK+R ALQRSMGLKIEQLKAE+ QLDE
Sbjct: 149 FDALLAKLPEKERGALQRSMGLKIEQLKAEILQLDE 184