Miyakogusa Predicted Gene

Lj0g3v0288639.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0288639.1 Non Characterized Hit- tr|G1MEE5|G1MEE5_AILME
Uncharacterized protein OS=Ailuropoda melanoleuca
GN=R,30.21,2e-17,seg,NULL; no description,NULL; RNase_P_p30,RNase P
subunit p30; PHP domain-like,Polymerase/histidino,CUFF.19304.1
         (207 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr2g096090.1 | polymerase/histidinol phosphatase-like protein...   291   3e-79

>Medtr2g096090.1 | polymerase/histidinol phosphatase-like protein,
           putative | HC | chr2:41023372-41018051 | 20130731
          Length = 774

 Score =  291 bits (745), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 141/197 (71%), Positives = 158/197 (80%), Gaps = 1/197 (0%)

Query: 1   MGFFDLNIPYPE-STRATKSTVESTRTKLAVKAMELGYTGIAYNRTIKGVMSDQHRCXXX 59
           MGFFDLNIPYP  +T+ +KST+E+ RT+LAVKAMELGYTGIAYNRT+KG+MSD HRC   
Sbjct: 1   MGFFDLNIPYPSPTTKPSKSTIENNRTRLAVKAMELGYTGIAYNRTMKGLMSDNHRCSIS 60

Query: 60  XXXXXXXXXXXPVLTSSAKLHRNLLGIPSSTPFRQYTRLTVCVDNPSQAQSLNAGNPILK 119
                      P L SSAKLHR LLG+ +STPFRQYTR+TVCV+N  QA +LNAGNPILK
Sbjct: 61  PLSLSSLLNVVPFLASSAKLHRELLGVSASTPFRQYTRITVCVENTLQANALNAGNPILK 120

Query: 120 TYDLVAVKPSNQVAFDLACERMEVDIFSFDFSTNLPFRLKLPMVKAATQRGVCFEVTYSG 179
           TYDLVAV P NQ AFD+ACERM VDI S DFS  LPFRLK  MVK ATQRGV FEV+YSG
Sbjct: 121 TYDLVAVMPLNQNAFDVACERMAVDIISIDFSAKLPFRLKQSMVKMATQRGVVFEVSYSG 180

Query: 180 LIADVQIRRLLISNAKV 196
           LIADVQ+RR LISNAK+
Sbjct: 181 LIADVQLRRQLISNAKL 197