Miyakogusa Predicted Gene

Lj0g3v0288609.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0288609.4 Non Characterized Hit- tr|I3SUJ1|I3SUJ1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,95.7,0,LRR,Leucine-rich repeat; LRR_8,NULL; U2 SMALL NUCLEAR
RIBONUCLEOPROTEIN A,NULL; no description,NULL;,CUFF.19325.4
         (280 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g004180.2 | U2 small nuclear ribonucleoprotein A | HC | ch...   467   e-132
Medtr6g004180.1 | U2 small nuclear ribonucleoprotein A | HC | ch...   467   e-132
Medtr8g077860.1 | hypothetical protein | HC | chr8:33154020-3314...    50   3e-06
Medtr8g077860.2 | hypothetical protein | HC | chr8:33154020-3314...    50   3e-06

>Medtr6g004180.2 | U2 small nuclear ribonucleoprotein A | HC |
           chr6:161626-156383 | 20130731
          Length = 275

 Score =  467 bits (1202), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/279 (85%), Positives = 254/279 (91%), Gaps = 5/279 (1%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTLDLSDNEIVKLENI 60
           MVRLTADLIWKSPHFFN IKERELDLRGNKI+VIENLGATEDQFDT+DLSDNEIVKLEN+
Sbjct: 1   MVRLTADLIWKSPHFFNTIKERELDLRGNKISVIENLGATEDQFDTVDLSDNEIVKLENL 60

Query: 61  PYLNRLGTLLINNNRVTRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLQFLSL 120
           P LNRLGTLLINNNR+TRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPL SLPKLQFLSL
Sbjct: 61  PNLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLTSLPKLQFLSL 120

Query: 121 LDNNITKKANYRLYVISKLKSLRVLDFKKVKNKERLEAKNLFASEEVIEKVQKTPVKTIS 180
           LDNNITKK NYRLYVI KLKSLRVLDFKKVK+KERLEAKNLF S+E IE+ Q TP    +
Sbjct: 121 LDNNITKKVNYRLYVIHKLKSLRVLDFKKVKDKERLEAKNLFESKEAIEEAQNTP----A 176

Query: 181 PGETPNVSEATEDQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGLLPEDLK 240
           P ETP+VSEATE+QQTPKV APTPEQIIAIKAAIV+SQTLEEVARLEKALKSG LP DLK
Sbjct: 177 PVETPDVSEATEEQQTPKVTAPTPEQIIAIKAAIVSSQTLEEVARLEKALKSGQLPADLK 236

Query: 241 SLNGNVTLDNVNEKGEDVVHDESNDTREQKNTDSAAMEQ 279
           SL  N+ +DNVNEK +DVV DES DT+EQ NTDS AMEQ
Sbjct: 237 SLTDNIMIDNVNEK-QDVVPDESKDTQEQSNTDSTAMEQ 274


>Medtr6g004180.1 | U2 small nuclear ribonucleoprotein A | HC |
           chr6:160835-156691 | 20130731
          Length = 308

 Score =  467 bits (1202), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/279 (85%), Positives = 254/279 (91%), Gaps = 5/279 (1%)

Query: 1   MVRLTADLIWKSPHFFNAIKERELDLRGNKIAVIENLGATEDQFDTLDLSDNEIVKLENI 60
           MVRLTADLIWKSPHFFN IKERELDLRGNKI+VIENLGATEDQFDT+DLSDNEIVKLEN+
Sbjct: 34  MVRLTADLIWKSPHFFNTIKERELDLRGNKISVIENLGATEDQFDTVDLSDNEIVKLENL 93

Query: 61  PYLNRLGTLLINNNRVTRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLASLPKLQFLSL 120
           P LNRLGTLLINNNR+TRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPL SLPKLQFLSL
Sbjct: 94  PNLNRLGTLLINNNRITRINPNIGEFLPNLHTLVLTNNRIVNLVEIDPLTSLPKLQFLSL 153

Query: 121 LDNNITKKANYRLYVISKLKSLRVLDFKKVKNKERLEAKNLFASEEVIEKVQKTPVKTIS 180
           LDNNITKK NYRLYVI KLKSLRVLDFKKVK+KERLEAKNLF S+E IE+ Q TP    +
Sbjct: 154 LDNNITKKVNYRLYVIHKLKSLRVLDFKKVKDKERLEAKNLFESKEAIEEAQNTP----A 209

Query: 181 PGETPNVSEATEDQQTPKVVAPTPEQIIAIKAAIVNSQTLEEVARLEKALKSGLLPEDLK 240
           P ETP+VSEATE+QQTPKV APTPEQIIAIKAAIV+SQTLEEVARLEKALKSG LP DLK
Sbjct: 210 PVETPDVSEATEEQQTPKVTAPTPEQIIAIKAAIVSSQTLEEVARLEKALKSGQLPADLK 269

Query: 241 SLNGNVTLDNVNEKGEDVVHDESNDTREQKNTDSAAMEQ 279
           SL  N+ +DNVNEK +DVV DES DT+EQ NTDS AMEQ
Sbjct: 270 SLTDNIMIDNVNEK-QDVVPDESKDTQEQSNTDSTAMEQ 307


>Medtr8g077860.1 | hypothetical protein | HC |
           chr8:33154020-33149706 | 20130731
          Length = 479

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 47  LDLSDNEIVKLENIPYLNRLGTLLINNNRVTR-INPNIGEFLPNLHTLVLTNNRIVNLVE 105
           L +++  +  LE  P L  L  L +++NR+   +   +   L +L  L L+NNRI N  +
Sbjct: 61  LSIANVGVSSLEQFPRLRSLQKLNLSDNRIAGGLEYLVEAGLESLRDLDLSNNRIQNFED 120

Query: 106 IDPLASLPKLQFLSLLDNNITKKANYRLYVISKLKSLRVLDFKKVKNKERLEA 158
           + PLA + KL  L L +  +T+  +YR  V   +KSL+ LD    +  ER E+
Sbjct: 121 LAPLAQV-KLVSLDLYECPVTRVKDYRSRVFGLIKSLKYLDKMDAEENERPES 172


>Medtr8g077860.2 | hypothetical protein | HC |
           chr8:33154020-33149706 | 20130731
          Length = 479

 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 60/113 (53%), Gaps = 2/113 (1%)

Query: 47  LDLSDNEIVKLENIPYLNRLGTLLINNNRVTR-INPNIGEFLPNLHTLVLTNNRIVNLVE 105
           L +++  +  LE  P L  L  L +++NR+   +   +   L +L  L L+NNRI N  +
Sbjct: 61  LSIANVGVSSLEQFPRLRSLQKLNLSDNRIAGGLEYLVEAGLESLRDLDLSNNRIQNFED 120

Query: 106 IDPLASLPKLQFLSLLDNNITKKANYRLYVISKLKSLRVLDFKKVKNKERLEA 158
           + PLA + KL  L L +  +T+  +YR  V   +KSL+ LD    +  ER E+
Sbjct: 121 LAPLAQV-KLVSLDLYECPVTRVKDYRSRVFGLIKSLKYLDKMDAEENERPES 172