Miyakogusa Predicted Gene

Lj0g3v0288079.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0288079.1 Non Characterized Hit- tr|I3SY62|I3SY62_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=2
SV,40,0.00000000005,seg,NULL,CUFF.19249.1
         (101 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g116277.1 | plant/F18G18-20 protein | HC | chr4:48107654-4...    66   6e-12
Medtr3g106530.1 | plant/F18G18-20 protein | HC | chr3:49238810-4...    61   3e-10
Medtr2g450700.1 | hypothetical protein | HC | chr2:22527544-2252...    56   8e-09

>Medtr4g116277.1 | plant/F18G18-20 protein | HC |
           chr4:48107654-48106636 | 20130731
          Length = 203

 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 11/93 (11%)

Query: 14  TCMCSPTTHPGSFRCSMHK--NRPRSVLPRNTSNYNPHRSD---------SSKANSLKAI 62
           TCMCSPTTHPGSFRCS+HK      +V P + +  N  RS            + + +K  
Sbjct: 110 TCMCSPTTHPGSFRCSLHKGFGSRAAVTPYSQNRLNARRSAMTNSLVRIRGVEGDLVKRA 169

Query: 63  LLQIIKPSNQDLHRRKNFQPKPTRFYLMNSNTD 95
           L  +I+PS+    RR +F P+P+R  +M    D
Sbjct: 170 LAALIRPSSHQQKRRGDFHPRPSRLSVMTKAQD 202


>Medtr3g106530.1 | plant/F18G18-20 protein | HC |
           chr3:49238810-49241062 | 20130731
          Length = 223

 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 22/95 (23%)

Query: 14  TCMCSPTTHPGSFRCSMHKNRPRSVLPRNTSNYNPH-----------------RSDSSKA 56
           TCMCSPT HPGSFRCS+HKN        N+SN + +                 R    + 
Sbjct: 130 TCMCSPTNHPGSFRCSLHKNN-----GNNSSNADSYPSTRLNMRRSAMKNSLVRIGGVEG 184

Query: 57  NSLKAILLQIIKPSNQDLHRRKNFQPKPTRFYLMN 91
             +K  L  +I+PS+    RR  F+P+P+R  +M+
Sbjct: 185 EWVKRALTALIRPSSHQQRRRSAFEPRPSRLSVMS 219


>Medtr2g450700.1 | hypothetical protein | HC |
           chr2:22527544-22527993 | 20130731
          Length = 149

 Score = 55.8 bits (133), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 52/89 (58%), Gaps = 14/89 (15%)

Query: 14  TCMCSPTTHPGSFRCSMHKNRPRSVLPRNTSNYNPHRSDSSKANSL-----------KAI 62
           TCMCSP+THPGSFRC +HKN   S     ++ +N  R  S+ ANSL           K  
Sbjct: 58  TCMCSPSTHPGSFRCRLHKN-STSSKTSTSNRHNVRR--SAMANSLVRISRLEGELVKRA 114

Query: 63  LLQIIKPSNQDLHRRKNFQPKPTRFYLMN 91
           L  +I+  + +  RR NFQP+P+RF +M+
Sbjct: 115 LEALIRRCSYNQRRRCNFQPRPSRFSVMS 143