Miyakogusa Predicted Gene

Lj0g3v0287739.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0287739.3 tr|G7KPS9|G7KPS9_MEDTR Pentatricopeptide
repeat-containing protein OS=Medicago truncatula
GN=MTR_6g0,71.11,0.0000000008, ,CUFF.19230.3
         (77 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr6g069480.3 | PPR containing plant-like protein | HC | chr6:...    70   5e-13
Medtr6g069480.1 | PPR containing plant-like protein | HC | chr6:...    69   9e-13
Medtr6g069480.2 | PPR containing plant-like protein | HC | chr6:...    69   9e-13
Medtr6g069480.4 | PPR containing plant-like protein | HC | chr6:...    69   9e-13

>Medtr6g069480.3 | PPR containing plant-like protein | HC |
          chr6:25013140-25021600 | 20130731
          Length = 828

 Score = 69.7 bits (169), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/74 (52%), Positives = 44/74 (59%), Gaps = 3/74 (4%)

Query: 7  LLCGQFQI---ASITIAVKSNSLEILPPQQQQVVDALCSGERKKASDLLLDFGYRSRSLK 63
          L C  +Q    A I  +    +  I    Q Q+V AL SGERKKAS LLLDFG+RS SL 
Sbjct: 20 LKCHHYQYVHKAEIEFSRNLTTTTIGSSVQLQIVKALHSGERKKASHLLLDFGHRSHSLS 79

Query: 64 ADDFVGILNYCARS 77
          ADDFV I  YCA S
Sbjct: 80 ADDFVNIFKYCAES 93


>Medtr6g069480.1 | PPR containing plant-like protein | HC |
           chr6:25014071-25021136 | 20130731
          Length = 805

 Score = 69.3 bits (168), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 35/45 (77%)

Query: 33  QQQVVDALCSGERKKASDLLLDFGYRSRSLKADDFVGILNYCARS 77
           Q Q+V AL SGERKKAS LLLDFG+RS SL ADDFV I  YCA S
Sbjct: 58  QLQIVKALHSGERKKASHLLLDFGHRSHSLSADDFVNIFKYCAES 102


>Medtr6g069480.2 | PPR containing plant-like protein | HC |
           chr6:25013099-25021600 | 20130731
          Length = 837

 Score = 68.9 bits (167), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 35/45 (77%)

Query: 33  QQQVVDALCSGERKKASDLLLDFGYRSRSLKADDFVGILNYCARS 77
           Q Q+V AL SGERKKAS LLLDFG+RS SL ADDFV I  YCA S
Sbjct: 58  QLQIVKALHSGERKKASHLLLDFGHRSHSLSADDFVNIFKYCAES 102


>Medtr6g069480.4 | PPR containing plant-like protein | HC |
           chr6:25013140-25021600 | 20130731
          Length = 837

 Score = 68.9 bits (167), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/45 (73%), Positives = 35/45 (77%)

Query: 33  QQQVVDALCSGERKKASDLLLDFGYRSRSLKADDFVGILNYCARS 77
           Q Q+V AL SGERKKAS LLLDFG+RS SL ADDFV I  YCA S
Sbjct: 58  QLQIVKALHSGERKKASHLLLDFGHRSHSLSADDFVNIFKYCAES 102