Miyakogusa Predicted Gene

Lj0g3v0287199.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0287199.1 Non Characterized Hit- tr|D8QPC1|D8QPC1_SELML
Putative uncharacterized protein OS=Selaginella
moelle,40.27,1e-17,seg,NULL; Dna2,DNA replication factor Dna2,
N-terminal,CUFF.19180.1
         (417 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g034575.1 | DNA replication ATP-dependent helicase Dna2 | ...   452   e-127
Medtr8g467950.1 | hypothetical protein | LC | chr8:24578728-2457...    83   6e-16

>Medtr7g034575.1 | DNA replication ATP-dependent helicase Dna2 | HC
           | chr7:13072986-13090873 | 20130731
          Length = 1335

 Score =  452 bits (1164), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/392 (61%), Positives = 287/392 (73%), Gaps = 16/392 (4%)

Query: 27  PQPSKYGIQHFFDRHXXXXXXXXXXXXXXXXXSAGEVLSSSQXXXXXXXXXXXXXXXXXV 86
           PQPSKYGIQHFFDRH                 ++    ++S                   
Sbjct: 22  PQPSKYGIQHFFDRHTTQQQNSQKLQSNNSNATSQVADAASDSRPPPEKSTDAVN----- 76

Query: 87  ETPSLSEVSPEISKSVSRNKRVKFSPGMFIKPSQDDGADEVTWKISPVNERLQAVSKQMP 146
           E  +LSEVSPE+SK++SR KR KFSPGMFIK SQDDGADEVTWKISPVNERLQAVSK+MP
Sbjct: 77  EADTLSEVSPEMSKTMSR-KRFKFSPGMFIKQSQDDGADEVTWKISPVNERLQAVSKRMP 135

Query: 147 EIIKALAESSRINLSPIHGCSEDETFRDKDGRVEKLLTNTSIPNGSAKPLVPMSKLGPQR 206
           +II+ALAESSR N+  I  CSED+T  DK  + ++LL  TS PN S K  + +SKLG ++
Sbjct: 136 KIIQALAESSRANMLQIRRCSEDKTSLDKGDKADELLI-TSTPNASTKAPLSLSKLGLKK 194

Query: 207 INPGRDVEFSVNSTAVSSSGVSGDESPFRTPPSLSFRQDKVQLAKGVEHSGPSDQLFLRQ 266
           +NP R V+ + N T +S+S V+   +PFRTPPSLS R    +LAK  EH+GPSDQ FLRQ
Sbjct: 195 LNPDRGVDCNGNPTTLSNSSVAVGRNPFRTPPSLSCR----ELAKDDEHNGPSDQPFLRQ 250

Query: 267 HKKALLELLDQVEDAITVDNDAICNKTTYSFKSQDGIAND-PARANHAVERTKSHKPKEA 325
           HKKALLELLDQVEDAI VDND +C+KTT+S  SQDGIA+  P RANH VERTKSH PKE 
Sbjct: 251 HKKALLELLDQVEDAIGVDNDTVCDKTTHSCNSQDGIADGLPVRANHLVERTKSHIPKEV 310

Query: 326 TSVLSNSSYLALEVSEKYRPANSSSSQCSYKVLRLLNEKTGEERVVNLRDEWSYSVIAPG 385
            SV S+SSYL LEVSEK +PA    ++  YKVLRLLNE++GEER VNL DEWSYSV+APG
Sbjct: 311 VSVFSDSSYLVLEVSEKSQPA----AKGPYKVLRLLNEQSGEERAVNLWDEWSYSVVAPG 366

Query: 386 DTVNIIGQFDEGGNCDIDHDNNFLIVHPDTLV 417
           +TVNIIG+FDEGG+CDI+HDNNFLIVHPD LV
Sbjct: 367 NTVNIIGEFDEGGSCDINHDNNFLIVHPDILV 398


>Medtr8g467950.1 | hypothetical protein | LC |
           chr8:24578728-24578275 | 20130731
          Length = 131

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 51/70 (72%), Gaps = 1/70 (1%)

Query: 270 ALLELLDQVEDAITVDNDAICNKTTYSFKSQDGIAND-PARANHAVERTKSHKPKEATSV 328
           A LELLDQVED I VDND IC+KT +S  SQ G+ ++ P +ANH +ER KSH PKE  ++
Sbjct: 58  AFLELLDQVEDVIGVDNDTICDKTAHSCNSQHGLDDELPIKANHLIERNKSHIPKEVVNL 117

Query: 329 LSNSSYLALE 338
             +S+YLA +
Sbjct: 118 FFDSNYLAFD 127