Miyakogusa Predicted Gene

Lj0g3v0286589.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0286589.1 Non Characterized Hit- tr|H9KQU5|H9KQU5_APIME
Uncharacterized protein OS=Apis mellifera GN=Rab3gap1
,25.14,3e-17,seg,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY NOT NAMED,Rab3
GTPase-activating protein catalytic subuni,CUFF.19117.1
         (540 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr3g465600.1 | Rab3 GTPase-activating protein catalytic subun...   916   0.0  
Medtr5g093230.1 | Rab3 GTPase-activating protein catalytic subun...    61   2e-09
Medtr3g052790.1 | Rab3 GTPase-activating protein catalytic subun...    59   1e-08

>Medtr3g465600.1 | Rab3 GTPase-activating protein catalytic subunit
           | HC | chr3:26564199-26578240 | 20130731
          Length = 952

 Score =  916 bits (2367), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/503 (87%), Positives = 464/503 (92%), Gaps = 3/503 (0%)

Query: 41  LASSWERFISEIEAVCRLWMSDGPKNLLEKGAVHLEYSGNLYKVKSELKYAMKSYCMEYY 100
           LASSWERFISEIEAVCRLWMSDGPKNL+ KGAV LEYSGNLYKV SE KYA+K+YCMEYY
Sbjct: 47  LASSWERFISEIEAVCRLWMSDGPKNLMVKGAVLLEYSGNLYKVTSETKYALKTYCMEYY 106

Query: 101 FETKPD---GKPADWNFDLHDVQLCFGVKEFLVIAPQSASGVVLDPPEASKLLSAVAIAL 157
           FET P    GKPA+WN DLHD+QLCFGVKEFLVIAPQSASGVVLD PEASKLLSAVAIAL
Sbjct: 107 FETNPSDDAGKPANWNLDLHDLQLCFGVKEFLVIAPQSASGVVLDAPEASKLLSAVAIAL 166

Query: 158 SNCSSLWPAFVPVHDPSRKAYIGIQSMGTVFTRRFEADRIGSQVPIKLMHLEGLYELFVS 217
           SNCSSLWPAFVPVHDPSRKAYIGIQSMGTVFTRRFEADRIGSQVPIKLMHLEGLYELFVS
Sbjct: 167 SNCSSLWPAFVPVHDPSRKAYIGIQSMGTVFTRRFEADRIGSQVPIKLMHLEGLYELFVS 226

Query: 218 KFAYSTLDLSVHDFKVRFAMKLTFRTLPYDDDYMKGFGEKITKSGENLTGEMSNGKQWDD 277
           KFAYSTLDLSVH+FKVR AMKLTFRTLP+D+DYMK F  KI KS ENLTGE S+G QWDD
Sbjct: 227 KFAYSTLDLSVHNFKVRIAMKLTFRTLPFDEDYMKDFDSKINKSEENLTGETSSGTQWDD 286

Query: 278 DCSWSEWYSAEDPVKGFELITIWSEKMVESSMEMAELENASPHEAEKWLISLRPEGPKGN 337
           DCSWSEWYSAEDPVKGFELITIWSEKMVESSMEMAELENASPHEAEKWLISLR EG K +
Sbjct: 287 DCSWSEWYSAEDPVKGFELITIWSEKMVESSMEMAELENASPHEAEKWLISLRLEGSKES 346

Query: 338 RIGFASQLHLLVDALEMSFEAQFIEDFVSVENPGSDNLKSSMVIPSPAVRDRVLKELFIE 397
           R+GFASQLHLLVDAL+MSFEA FIEDFVS ENPGSDNLKSSMVIPSPAVRDRVLKELFIE
Sbjct: 347 RVGFASQLHLLVDALQMSFEAHFIEDFVSAENPGSDNLKSSMVIPSPAVRDRVLKELFIE 406

Query: 398 GVQLSKFADDRHKTSRAIKGAPLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREVRWCW 457
           GVQ S F D  +KTSR++KGAPLESLFAQFCLHSLWFGNCNIRAI+VLWIEFVREVRWCW
Sbjct: 407 GVQFSDFTDGGYKTSRSVKGAPLESLFAQFCLHSLWFGNCNIRAISVLWIEFVREVRWCW 466

Query: 458 EESQPLPRMPANGTIDLSTCLINQKLQMLAICIEKKCQLNEDFQDCIGSLDHIDSMTEEE 517
           EESQPLPRM  NG+IDLST LI QKLQMLAICIE+KCQ+NED+QDCIGS+DHIDSMTEEE
Sbjct: 467 EESQPLPRMAPNGSIDLSTSLIYQKLQMLAICIERKCQMNEDYQDCIGSIDHIDSMTEEE 526

Query: 518 SVIGNDSFNKQTLSEGFSGKVDR 540
           SV+G+D  + QT SE F GKVDR
Sbjct: 527 SVVGDDLLSIQTPSEIFPGKVDR 549


>Medtr5g093230.1 | Rab3 GTPase-activating protein catalytic subunit
           | HC | chr5:40696171-40704190 | 20130731
          Length = 692

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 405 ADDRHKTSRAIKGAPLESLFAQFCLHSLWFGNCNIRAIAVLWIEFVREVRWCWEESQPLP 464
            +D     R I GAP ESL  +  L  +      +R +A+ W   V E+R  W E Q LP
Sbjct: 237 GNDMTSLPRDIHGAPPESLVVK--LAEIVGNYKTVRKMALFWCRVVEELRKFWSEEQYLP 294

Query: 465 RMPANGTIDLSTCLINQKLQMLAICIEKK 493
            +P N   DL TCL+ Q  Q++  CI +K
Sbjct: 295 GVPQNDIPDLKTCLLYQHFQVINCCISRK 323


>Medtr3g052790.1 | Rab3 GTPase-activating protein catalytic subunit
           | HC | chr3:20895915-20902043 | 20130731
          Length = 704

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 413 RAIKGAPLESLFAQFCLHSLWFGNC-NIRAIAVLWIEFVREVRWCWEESQPLPRMPANGT 471
           R I GAP ESL  +    +   GN   +R + + W   + E+R  W E + LP +P +  
Sbjct: 253 RDIHGAPPESLVVKL---AEVIGNLKTLREMEIFWCRVIAEIRKLWSEEKHLPGVPLDDI 309

Query: 472 IDLSTCLINQKLQMLAICIEKK 493
            DL +CL+NQ+ Q++  CI +K
Sbjct: 310 PDLKSCLLNQQFQVINCCISRK 331