Miyakogusa Predicted Gene

Lj0g3v0286529.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0286529.1 tr|B9MYC2|B9MYC2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_594619 PE=4
SV=1,30.97,0.0000000000001,seg,NULL,CUFF.19126.1
         (229 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr4g079100.1 | hypothetical protein | HC | chr4:30531357-3053...   151   6e-37

>Medtr4g079100.1 | hypothetical protein | HC |
           chr4:30531357-30537508 | 20130731
          Length = 411

 Score =  151 bits (381), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 121/224 (54%), Positives = 140/224 (62%), Gaps = 15/224 (6%)

Query: 6   LQGGNEEPDDLKTTEDTELANRMSKDLNLDDFAADQFGXXXXXXXXXXAPSTFTLSNDFM 65
           L   ++EP   +T ED ELANRMSK+LNLD+FAADQF           A ST  LS+DF+
Sbjct: 203 LAVSSDEPGVHETAEDCELANRMSKELNLDNFAADQF-TSSSSCSSSHAASTPALSDDFL 261

Query: 66  VPVNYVNDEFQHVGSSGKMKSCLPSAEGNLHSTKDKTGKQPTFEAATAEKELDMLLDSLG 125
           +PV+ +N EFQ VGSSG+ K+  PSAE NLHS +D   K  TFEA   E++LDMLLDSL 
Sbjct: 262 IPVSNINVEFQQVGSSGENKAFQPSAETNLHSIEDTAVKHSTFEATAVEEDLDMLLDSLD 321

Query: 126 ETKILDSTGVKSNAGFPVSLGASLVDPSQISYQEPATSETASVTASIDDALDDLLEETST 185
            T        KS+A F V LG    D  QIS +EP  S  ASVTAS+DDALDDLLEETST
Sbjct: 322 VT--------KSSASFTVPLG----DLPQISNKEPVQSRIASVTASLDDALDDLLEETST 369

Query: 186 LMNPNVSLRRPQEEKPVTQXXXXXXXXXXXXXXXDDFDSWFDTL 229
           LM PNV L  PQEEK V                 DDFDSWFD+L
Sbjct: 370 LMKPNV-LSWPQEEKHV-HHSILSSHSQNKSKVSDDFDSWFDSL 411