Miyakogusa Predicted Gene

Lj0g3v0286379.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0286379.1 Non Characterized Hit- tr|I1Q9I8|I1Q9I8_ORYGL
Uncharacterized protein (Fragment) OS=Oryza
glaberrima,37.74,0.0000000000005,FAMILY NOT NAMED,NULL; no
description,Nucleotide-binding, alpha-beta plait;
seg,NULL,CUFF.19101.1
         (197 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr7g090650.1 | RNA-binding region RNP-1 protein | HC | chr7:3...   282   1e-76
Medtr3g021420.1 | RNA-binding region RNP-1 protein | HC | chr3:6...   277   5e-75
Medtr3g030930.2 | RNA-binding region RNP-1 protein | HC | chr3:9...   276   1e-74
Medtr3g030930.1 | RNA-binding region RNP-1 protein | HC | chr3:9...   276   1e-74
Medtr3g030930.3 | RNA-binding region RNP-1 protein | HC | chr3:9...   276   1e-74

>Medtr7g090650.1 | RNA-binding region RNP-1 protein | HC |
           chr7:35678608-35682263 | 20130731
          Length = 200

 Score =  282 bits (721), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 136/200 (68%), Positives = 162/200 (81%), Gaps = 3/200 (1%)

Query: 1   MGSSEEEFAAFEQKVRRTVYFDNLSPQVTESVMRTALDQFATVKSVKFIPNYLGPS-LPQ 59
           M SS E++AAFE+KV+RTVYFDN+SPQVTESV+RTALDQFA+VKSVKFIPNYLGPS +PQ
Sbjct: 1   MESSAEDYAAFEEKVQRTVYFDNMSPQVTESVIRTALDQFASVKSVKFIPNYLGPSSMPQ 60

Query: 60  TALVELDSSKKVEDIVTMIGQYPFMMSGMPRPVRARPAVIEMFDDRPVNPNRKVEYRWLE 119
            ALVELDS+KKV++++ MI QYPFMMSGMPRPVRARPAV+EMFDDRP+ P RK++  WLE
Sbjct: 61  CALVELDSAKKVKEVIAMIKQYPFMMSGMPRPVRARPAVMEMFDDRPMKPKRKMKCCWLE 120

Query: 120 PSDPDMEVAKQLKNLTRKHAAEIAHMHXXXXXXXXXXXXXXXXXLKMHHKKFKMIDGIIT 179
            SDPD EVA +LKNLTRKH+AEIA MH                 LK+H+KKF+MIDGI++
Sbjct: 121 QSDPDFEVAMELKNLTRKHSAEIALMHRVLLKEEEKLAAQQAETLKVHYKKFRMIDGIMS 180

Query: 180 --DTSAIRLARKYNLNVGDH 197
             D +A+ LARKYNL V D 
Sbjct: 181 DRDKTALTLARKYNLAVADE 200


>Medtr3g021420.1 | RNA-binding region RNP-1 protein | HC |
           chr3:6276004-6271203 | 20130731
          Length = 198

 Score =  277 bits (708), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 133/198 (67%), Positives = 158/198 (79%), Gaps = 1/198 (0%)

Query: 1   MGSSEEEFAAFEQKVRRTVYFDNLSPQVTESVMRTALDQFATVKSVKFIPNYLGPS-LPQ 59
           M SS E++AAFE+KV+RTVY DN+SPQVTESV+RTALDQFA+VKSVKFIPNYLGPS +PQ
Sbjct: 1   MESSAEDYAAFEEKVQRTVYIDNMSPQVTESVIRTALDQFASVKSVKFIPNYLGPSSMPQ 60

Query: 60  TALVELDSSKKVEDIVTMIGQYPFMMSGMPRPVRARPAVIEMFDDRPVNPNRKVEYRWLE 119
            ALVELDS+KKV++++ MI QYPFMMSGMPRPVRARP V+EMFDDRP+ P RK++  WLE
Sbjct: 61  CALVELDSAKKVKEVIAMIKQYPFMMSGMPRPVRARPGVMEMFDDRPMKPKRKMKCCWLE 120

Query: 120 PSDPDMEVAKQLKNLTRKHAAEIAHMHXXXXXXXXXXXXXXXXXLKMHHKKFKMIDGIIT 179
            SDPD EVA +LKNLTRKH++EIA MH                 LK+H+KKF+MIDGI+ 
Sbjct: 121 QSDPDFEVAVELKNLTRKHSSEIALMHRVLLKEEEKLAAQQAETLKVHYKKFRMIDGIMG 180

Query: 180 DTSAIRLARKYNLNVGDH 197
           D +A  LARKYNL V D 
Sbjct: 181 DKTAHTLARKYNLAVADE 198


>Medtr3g030930.2 | RNA-binding region RNP-1 protein | HC |
           chr3:9821516-9825756 | 20130731
          Length = 198

 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/198 (67%), Positives = 158/198 (79%), Gaps = 1/198 (0%)

Query: 1   MGSSEEEFAAFEQKVRRTVYFDNLSPQVTESVMRTALDQFATVKSVKFIPNYLGPS-LPQ 59
           M SS E++AAFE+KV+RTVY DN+SPQVTESV+RTALDQFA+VKSVKFIPN LGPS +PQ
Sbjct: 1   MESSAEDYAAFEEKVQRTVYIDNMSPQVTESVIRTALDQFASVKSVKFIPNSLGPSSMPQ 60

Query: 60  TALVELDSSKKVEDIVTMIGQYPFMMSGMPRPVRARPAVIEMFDDRPVNPNRKVEYRWLE 119
            ALVELDS+KKV++++ MI QYPFMMSGMPRPVRARPAV+EMFDDRP+ P RK++  WLE
Sbjct: 61  CALVELDSAKKVKEVIAMIKQYPFMMSGMPRPVRARPAVMEMFDDRPMKPKRKMKCCWLE 120

Query: 120 PSDPDMEVAKQLKNLTRKHAAEIAHMHXXXXXXXXXXXXXXXXXLKMHHKKFKMIDGIIT 179
            SDPD EVA +LKNLTRKH++EIA MH                 LK+H+KKF+MIDGI+ 
Sbjct: 121 QSDPDFEVAVELKNLTRKHSSEIALMHRVLLKEEEKLAAQQAETLKVHYKKFRMIDGIMG 180

Query: 180 DTSAIRLARKYNLNVGDH 197
           D +A  LARKYNL V D 
Sbjct: 181 DKTAHTLARKYNLAVADE 198


>Medtr3g030930.1 | RNA-binding region RNP-1 protein | HC |
           chr3:9823393-9825732 | 20130731
          Length = 198

 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/198 (67%), Positives = 158/198 (79%), Gaps = 1/198 (0%)

Query: 1   MGSSEEEFAAFEQKVRRTVYFDNLSPQVTESVMRTALDQFATVKSVKFIPNYLGPS-LPQ 59
           M SS E++AAFE+KV+RTVY DN+SPQVTESV+RTALDQFA+VKSVKFIPN LGPS +PQ
Sbjct: 1   MESSAEDYAAFEEKVQRTVYIDNMSPQVTESVIRTALDQFASVKSVKFIPNSLGPSSMPQ 60

Query: 60  TALVELDSSKKVEDIVTMIGQYPFMMSGMPRPVRARPAVIEMFDDRPVNPNRKVEYRWLE 119
            ALVELDS+KKV++++ MI QYPFMMSGMPRPVRARPAV+EMFDDRP+ P RK++  WLE
Sbjct: 61  CALVELDSAKKVKEVIAMIKQYPFMMSGMPRPVRARPAVMEMFDDRPMKPKRKMKCCWLE 120

Query: 120 PSDPDMEVAKQLKNLTRKHAAEIAHMHXXXXXXXXXXXXXXXXXLKMHHKKFKMIDGIIT 179
            SDPD EVA +LKNLTRKH++EIA MH                 LK+H+KKF+MIDGI+ 
Sbjct: 121 QSDPDFEVAVELKNLTRKHSSEIALMHRVLLKEEEKLAAQQAETLKVHYKKFRMIDGIMG 180

Query: 180 DTSAIRLARKYNLNVGDH 197
           D +A  LARKYNL V D 
Sbjct: 181 DKTAHTLARKYNLAVADE 198


>Medtr3g030930.3 | RNA-binding region RNP-1 protein | HC |
           chr3:9822385-9825826 | 20130731
          Length = 198

 Score =  276 bits (705), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 133/198 (67%), Positives = 158/198 (79%), Gaps = 1/198 (0%)

Query: 1   MGSSEEEFAAFEQKVRRTVYFDNLSPQVTESVMRTALDQFATVKSVKFIPNYLGPS-LPQ 59
           M SS E++AAFE+KV+RTVY DN+SPQVTESV+RTALDQFA+VKSVKFIPN LGPS +PQ
Sbjct: 1   MESSAEDYAAFEEKVQRTVYIDNMSPQVTESVIRTALDQFASVKSVKFIPNSLGPSSMPQ 60

Query: 60  TALVELDSSKKVEDIVTMIGQYPFMMSGMPRPVRARPAVIEMFDDRPVNPNRKVEYRWLE 119
            ALVELDS+KKV++++ MI QYPFMMSGMPRPVRARPAV+EMFDDRP+ P RK++  WLE
Sbjct: 61  CALVELDSAKKVKEVIAMIKQYPFMMSGMPRPVRARPAVMEMFDDRPMKPKRKMKCCWLE 120

Query: 120 PSDPDMEVAKQLKNLTRKHAAEIAHMHXXXXXXXXXXXXXXXXXLKMHHKKFKMIDGIIT 179
            SDPD EVA +LKNLTRKH++EIA MH                 LK+H+KKF+MIDGI+ 
Sbjct: 121 QSDPDFEVAVELKNLTRKHSSEIALMHRVLLKEEEKLAAQQAETLKVHYKKFRMIDGIMG 180

Query: 180 DTSAIRLARKYNLNVGDH 197
           D +A  LARKYNL V D 
Sbjct: 181 DKTAHTLARKYNLAVADE 198