Miyakogusa Predicted Gene

Lj0g3v0286319.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0286319.1 Non Characterized Hit- tr|A9YWS8|A9YWS8_MEDTR
Putative uncharacterized protein (Fragment)
OS=Medicag,44.44,3e-19,Rhamnogal_lyase,Rhamnogalacturonate lyase;
PROKAR_LIPOPROTEIN,NULL; SUBFAMILY NOT NAMED,NULL; FAMILY,CUFF.19102.1
         (109 letters)

Database: Medicago_aa4.0v1 
           62,319 sequences; 21,947,249 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Medtr8g068110.3 | rhamnogalacturonate lyase B-like protein | HC ...   145   9e-36
Medtr8g068110.1 | rhamnogalacturonate lyase B-like protein | HC ...   145   9e-36
Medtr8g068110.2 | rhamnogalacturonate lyase B-like protein | HC ...   145   9e-36
Medtr8g068120.1 | rhamnogalacturonate lyase B-like protein | HC ...   144   1e-35
Medtr8g068160.1 | rhamnogalacturonate lyase B-like protein | HC ...   144   2e-35
Medtr5g031170.1 | rhamnogalacturonate lyase B-like protein | LC ...   100   4e-22
Medtr3g111410.1 | rhamnogalacturonate lyase B-like protein | HC ...    68   2e-12
Medtr3g111420.1 | rhamnogalacturonate lyase B-like protein | HC ...    63   6e-11
Medtr3g111380.1 | rhamnogalacturonate lyase B-like protein | HC ...    61   2e-10
Medtr5g066770.1 | rhamnogalacturonate lyase B-like protein | HC ...    60   5e-10

>Medtr8g068110.3 | rhamnogalacturonate lyase B-like protein | HC |
           chr8:28379569-28387444 | 20130731
          Length = 693

 Score =  145 bits (366), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 86/109 (78%), Gaps = 3/109 (2%)

Query: 1   MKMVDKKSKRFFFLWWFGITVQLCFLLCSCAEKTSLRRGLKDISSTKSTSIHSGLNLNTD 60
           MKM+ KK+    F WW G+ ++ CFLLC+C+E TSL  G K I+S  STSI   + LNT+
Sbjct: 3   MKMLSKKNNNVIFFWWLGMIMKFCFLLCACSENTSLSGGSKKINSFGSTSI---VKLNTE 59

Query: 61  NHQQLVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
           ++QQLV+DNGIVSVTLSRPEG+VI ISYN IDNILE+EN+E DRGYFDV
Sbjct: 60  DNQQLVIDNGIVSVTLSRPEGHVIAISYNGIDNILESENDEDDRGYFDV 108


>Medtr8g068110.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr8:28379463-28387444 | 20130731
          Length = 684

 Score =  145 bits (366), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 86/109 (78%), Gaps = 3/109 (2%)

Query: 1   MKMVDKKSKRFFFLWWFGITVQLCFLLCSCAEKTSLRRGLKDISSTKSTSIHSGLNLNTD 60
           MKM+ KK+    F WW G+ ++ CFLLC+C+E TSL  G K I+S  STSI   + LNT+
Sbjct: 3   MKMLSKKNNNVIFFWWLGMIMKFCFLLCACSENTSLSGGSKKINSFGSTSI---VKLNTE 59

Query: 61  NHQQLVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
           ++QQLV+DNGIVSVTLSRPEG+VI ISYN IDNILE+EN+E DRGYFDV
Sbjct: 60  DNQQLVIDNGIVSVTLSRPEGHVIAISYNGIDNILESENDEDDRGYFDV 108


>Medtr8g068110.2 | rhamnogalacturonate lyase B-like protein | HC |
           chr8:28379567-28387444 | 20130731
          Length = 684

 Score =  145 bits (366), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 70/109 (64%), Positives = 86/109 (78%), Gaps = 3/109 (2%)

Query: 1   MKMVDKKSKRFFFLWWFGITVQLCFLLCSCAEKTSLRRGLKDISSTKSTSIHSGLNLNTD 60
           MKM+ KK+    F WW G+ ++ CFLLC+C+E TSL  G K I+S  STSI   + LNT+
Sbjct: 3   MKMLSKKNNNVIFFWWLGMIMKFCFLLCACSENTSLSGGSKKINSFGSTSI---VKLNTE 59

Query: 61  NHQQLVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
           ++QQLV+DNGIVSVTLSRPEG+VI ISYN IDNILE+EN+E DRGYFDV
Sbjct: 60  DNQQLVIDNGIVSVTLSRPEGHVIAISYNGIDNILESENDEDDRGYFDV 108


>Medtr8g068120.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr8:28388856-28396258 | 20130731
          Length = 687

 Score =  144 bits (364), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 68/109 (62%), Positives = 85/109 (77%), Gaps = 6/109 (5%)

Query: 1   MKMVDKKSKRFFFLWWFGITVQLCFLLCSCAEKTSLRRGLKDISSTKSTSIHSGLNLNTD 60
           MK++ KK+K     WWFG+ VQ CFLLC CAEKTSLR G   I+S KS SI   + LNT 
Sbjct: 15  MKVLSKKNKHVILYWWFGMIVQFCFLLCVCAEKTSLRGG---INSLKSKSI---VKLNTQ 68

Query: 61  NHQQLVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
           +  +LVVDNGIVSV+++RPEGY++GISYN IDN+L++EN+E DRGYFDV
Sbjct: 69  DKHKLVVDNGIVSVSMARPEGYILGISYNGIDNVLDSENQELDRGYFDV 117


>Medtr8g068160.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr8:28415254-28408214 | 20130731
          Length = 685

 Score =  144 bits (362), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 67/109 (61%), Positives = 84/109 (77%), Gaps = 3/109 (2%)

Query: 1   MKMVDKKSKRFFFLWWFGITVQLCFLLCSCAEKTSLRRGLKDISSTKSTSIHSGLNLNTD 60
           M ++  K+    F WWFG+ V+ CFLLC+C++ TSLR GLK I++  ST +   + LNT+
Sbjct: 4   MNVLSMKNNNVIFFWWFGMIVKFCFLLCACSQNTSLRGGLKKINNLGSTVV---VKLNTE 60

Query: 61  NHQQLVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
           N QQLVVDNGIVSVTLS+PEGY+IGISYN IDNILE+E +E  RGYFDV
Sbjct: 61  NKQQLVVDNGIVSVTLSKPEGYLIGISYNGIDNILESEYKEHARGYFDV 109


>Medtr5g031170.1 | rhamnogalacturonate lyase B-like protein | LC |
           chr5:13365305-13370811 | 20130731
          Length = 672

 Score =  100 bits (248), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 46/102 (45%), Positives = 66/102 (64%), Gaps = 5/102 (4%)

Query: 8   SKRFFFLWWFGITVQLCFLLCSCAEKTSLRRGLKDISSTKSTSIHSGLNLNTDNHQQLVV 67
           S R   LWW+ + +QLCF   S  E  S RR ++ + + +S+     + +N  N QQ+V+
Sbjct: 4   SGRVLLLWWYIMALQLCFTFGSYLEYISFRRSVRGLPNAQSS-----VTINRQNSQQVVI 58

Query: 68  DNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
            NGI+S+TL+ P GYV+GISY  ++N+LE  NE  DRGYFDV
Sbjct: 59  SNGIMSLTLANPGGYVLGISYAGMENVLEAGNEADDRGYFDV 100


>Medtr3g111410.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr3:52066382-52061130 | 20130731
          Length = 648

 Score = 67.8 bits (164), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 31/56 (55%), Positives = 43/56 (76%), Gaps = 1/56 (1%)

Query: 54  GLNLNTDNHQQLVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
           G+ L+  +H  +V+DNGI+ VTLS PEG V GI Y++IDN+LE  NEE +RGY+D+
Sbjct: 5   GVQLSIQDHH-VVMDNGILRVTLSNPEGIVTGIQYSDIDNLLEVLNEESNRGYWDL 59


>Medtr3g111420.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr3:52074737-52067719 | 20130731
          Length = 652

 Score = 63.2 bits (152), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/45 (60%), Positives = 36/45 (80%)

Query: 65  LVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
           +V+DNGIV VTLS P+G V GI YN +DN+LE  N+E +RGY+D+
Sbjct: 33  VVMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRGYWDL 77


>Medtr3g111380.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr3:52050562-52046728 | 20130731
          Length = 648

 Score = 61.2 bits (147), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/45 (57%), Positives = 33/45 (73%)

Query: 65  LVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
           +V+DN IV V +S PEG V GI YN +DN+LE  N E DRGY+D+
Sbjct: 17  VVIDNDIVQVNISNPEGCVTGIQYNGLDNLLEINNHESDRGYWDI 61


>Medtr5g066770.1 | rhamnogalacturonate lyase B-like protein | HC |
           chr5:28213045-28205323 | 20130731
          Length = 644

 Score = 60.1 bits (144), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/49 (59%), Positives = 36/49 (73%), Gaps = 2/49 (4%)

Query: 61  NHQQLVVDNGIVSVTLSRPEGYVIGISYNEIDNILETENEEKDRGYFDV 109
           NH  +V+DNGIV V LS P G+V  I YN IDN+LE  NE+ +RGY+DV
Sbjct: 13  NH--VVMDNGIVQVYLSNPGGFVTRIQYNGIDNLLEALNEKNNRGYWDV 59